Scvi-tools

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://www.scvi-tools.org) for all the new functionality.

This is the first official release of `scvi-tools`.

This release is available via PyPi:


pip install scvi-tools


Conda release will follow (additional 1-3 days)

Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://scvi.readthedocs.io/en/latest/) for all the new functionality.

This is the first beta release of `scvi-tools`.

This release is available via PyPi:


pip install scvi-tools


Conda release will take additional time.

Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://scvi.readthedocs.io/en/latest/) for all the new functionality.

In this alpha release, we fixed various bugs in our DE functionality with sparse matrices, the memory configuration of anndata objects, automated the number of epochs for many models based on dataset size, fixed how we store categoricals so that anndatas set up with scvi-tools can be saved, fixed `scvi.__version__`, and other bug fixes.

This release is available via PyPi:


pip install scvi-tools


We are currently figuring out issues with our conda build.

Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://scvi.readthedocs.io/en/latest/) for all the new functionality.

In this alpha release, we fixed various bugs in our DE functionality, restored proper defaults, reduced an extra pass on the train set per epoch when using early stopping, and fixed bugs with `ScviConfig`.

This release is available via PyPi:


pip install scvi-tools


We are currently figuring out issues with our conda build.

Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://scvi.readthedocs.io/en/latest/) for all the new functionality.

In this release, we moved `scvi.dataset` to `scvi.data` and `scvi.models` to `scvi.model`.

This release is available via PyPi:


pip install scvi-tools


Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).

scvi` is now `scvi-tools`. This is a major upgrade and will break all previous code.

See the [docs](https://scvi.readthedocs.io/en/latest/) for all the new functionality.

This release is available via PyPi:


pip install scvi-tools


Please report any issues on [GitHub](https://github.com/YosefLab/scvi-tools).