Scib

Latest version: v1.1.4

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1.1.4

What's Changed
* Add GPU_id param for DESC by johnarevalo in https://github.com/theislab/scib/pull/372
* Update documentation clustering by mumichae in https://github.com/theislab/scib/pull/373
* more readable PCA computation and info retrieval by mumichae in https://github.com/theislab/scib/pull/377
* Set names when reading LISI CSV files by lazappi in https://github.com/theislab/scib/pull/380


**Full Changelog**: https://github.com/theislab/scib/compare/v1.1.3...v1.1.4

What's Changed
* Add GPU_id param for DESC by johnarevalo in https://github.com/theislab/scib/pull/372
* Update documentation clustering by mumichae in https://github.com/theislab/scib/pull/373
* more readable PCA computation and info retrieval by mumichae in https://github.com/theislab/scib/pull/377
* Set names when reading LISI CSV files by lazappi in https://github.com/theislab/scib/pull/380


**Full Changelog**: https://github.com/theislab/scib/compare/v1.1.3...v1.1.4

1.1.3

What's Changed
* Run iso label as discussed on friday by danielStrobl in https://github.com/theislab/scib/pull/370
* Scale isolated label ASW by mumichae in https://github.com/theislab/scib/pull/371
* Fix PCA regression error for sparse matrices by mumichae in https://github.com/theislab/scib/pull/364


**Full Changelog**: https://github.com/theislab/scib/compare/v1.1.2...v1.1.3

1.1.2

What's Changed
* Fix code coverage by mumichae in https://github.com/theislab/scib/pull/347
* Fix sc best practices link by mumichae in https://github.com/theislab/scib/pull/356
* Add perfect isolabel ASW test by mumichae in https://github.com/theislab/scib/pull/362
* Make louvain an optional dependency by mumichae in https://github.com/theislab/scib/pull/361
* Update isolated_labels.py by danielStrobl in https://github.com/theislab/scib/pull/368


**Full Changelog**: https://github.com/theislab/scib/compare/v1.1.1...v1.1.2

1.1.1

**Full Changelog**: https://github.com/theislab/scib/compare/v1.1.0...v1.1.1

1.1.0

What's Changed
* Add documentation for metrics preprocessing by mumichae in https://github.com/theislab/scib/pull/312
* Add test for duplicate columns by mumichae in https://github.com/theislab/scib/pull/311
* add deprecation decorator for asw_batch by mumichae in https://github.com/theislab/scib/pull/354


**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.5...v1.1.0

1.0.5

What's Changed
* Make rpy2 and anndata2ri optional by mumichae in https://github.com/theislab/scib/pull/339
* Fix batch silhouette bug by mumichae in https://github.com/theislab/scib/pull/342
* General optimised clustering function by mumichae in https://github.com/theislab/scib/pull/343
* Only pass max_epochs to SCVI.train if set by scottgigante-immunai in https://github.com/theislab/scib/pull/345
* add harmony by adamgayoso in https://github.com/theislab/scib/pull/317
* Fix kBET import issue by mumichae in https://github.com/theislab/scib/pull/350
* Update louvain to 0.8 by scottgigante-immunai in https://github.com/theislab/scib/pull/346

New Contributors
* scottgigante-immunai made their first contribution in https://github.com/theislab/scib/pull/345

**Full Changelog**: https://github.com/theislab/scib/compare/v1.0.4...v1.0.5

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