Rayoptics

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Major review and cleanup of the :mod:`~.raytr` package. Moved wave aberration calculations and support to new module :mod:`~.raytr.waveabr`.

Integrate :meth:`~.seq.interface.Interface.point_inside` query into the ray trace and add a new ray trace exception, :class:`~.raytr.traceerror.TraceRayBlockedError`. Use this to implement a pupil ray-based vignetting calculation and provide :func:`~.gui.appcmds.set_vignetting` to set the vignetted pupil rays for each field point and the companion function, :func:`~.gui.appcmds.set_apertures`, to set clear apertures based on the vignetted pupils at each field. to clear aperture. These new calculations are in the :mod:`~.raytr.vigcalc` module.

The addition of the ``set_vignetting`` function uncovered a bug in the ray plots; they didn't handle the case of needing to overfill the paraxial entrance pupil in wide angle lenses. The ray plots, :class:`~.mpl.axisarrayfigure.RayFanFigure` and :class:`~.mpl.analysisfigure.RayFanPlot`, were updated to correctly display overfilled pupils, and an example lens was added to demonstrate the issue.

A bug affecting the display of flats on concave surfaces was fixed. The cell phone lens example was updated to explain some of the controls added for greater control over lens element display.

Numerous updates to the documentation.

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Add :meth:`~.optical.opticalmodel.OpticalModel.flip` function to :class:`~.optical.opticalmodel.OpticalModel`. Can flip a range of surfaces, flip an element or an assembly.

Added :class:`~.elem.elements.Part` as an ABC for elements, et al, and added an :class:`~.elem.elements.Assembly` class allow groups of `Parts`. Parts and Profiles are now saved and restored correctly.

Revise :meth:`~.optical.opticalmodel.OpticalModel.update_model` operation, including splitting out derived property calculations into a separate :meth:`~.optical.opticalmodel.OpticalModel.update_optical_properties` function. Added `src_model` keyword to update_model so that submodels can filter on who originated the update.

Upgrade the |nubar| diagram to support the layer view control used in the |ybar| diagram. An `assembly` layer was added to the diagrams. The object/image conjugate shift on |ybar| diagram was fixed for the case of a virtual object.

Add `analysis_results` dictionary to submodels maintained by the `OpticalModel`. Move first order data there under keyword `parax_data`. Going forward, this is the natural place to put results from the different evaluators in the :mod:`~.raytr.analyses` module.

Removed convoluted ray offset calculation for `InteractiveLayout` and let the view bounds handle it.
Included the effect of defocus in transverse aberration plots (fixes bug in implementation).

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Implemented a formatted object output protocol, the listobj_str() method, that returns a formatted, descriptive string about the object's contents. This supersedes the use of listobj as a per-class method (see 0.7.1 release notes). This protocol was implemented in particular for profiles and parts of the optical specification. Added a console print function :func:`~listobj` that will work with objects that implement a listobj_str() method; the fallback is to invoke repr(obj). Thanks to asebian and rlabs-oss for their issue reports and dibyendumajumdar for continued discussions.

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Pass 2 on the |ybar| diagram layer capability. Handle thick elements and include a top level 'sys' layer. Fix insertion of system from file. Add support for models from the `OpticalBenchHub <https://www.photonstophotos.net/GeneralTopics/Lenses/OpticalBench/OpticalBenchHub.htm>`_ portion of Bill Claff's `PhotonsToPhotos <https://www.photonstophotos.net/>`_ website. Support odd polynomial surfaces in Zemax import. Added additional control over the use of flats when drawing lens elements, see ray-optics notebook `Cell Phone lens <https://github.com/mjhoptics/ray-optics-notebooks/blob/master/Cell%20Phone%20lens.ipynb>`_ for an example. Thanks also to wuffi for contributing 2 fixes to make the interactive ray-optics app more robust.

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Miscellaneous bug fixes, see check-in comments.

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Add RayFans to interactive layout. Add a multiple layer |ybar| diagram capability. Works well for thin lens systems. Systems with thick lenses (e.g. Double Gauss) don't work well. Fixes in the :mod:`~.raytr.analyses` module include getting the sign right for defocused transverse aberrations and using the image gap distance instead of parax img_dist for reference sphere definition. Miscellaneous fixes.