Pybids

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0.14.1

-------------------------------
Bug-fix release in the 0.14.x series.

* RF/FIX: Decompose filter construction for special queries and lists (826)

0.14.0

----------------------------------

New feature release in the 0.14.x series.

This release includes a significant refactor of BIDS Statistical Models,
replacing the ``bids.analysis`` module with ``bids.modeling``.

Changes to ``bids.layout`` are minimal, and we do not anticipate API breakage.

* FIX: LGTM.com warning: Implicit string concatenation in a list (785)
* FIX: Take the intersection of variables and Model.X,
ignoring missing variables (usually contrasts) (764)
* FIX: Associate "is_metadata" with Tag, not Entity; and only return
non-metadata entries for core Entities in ``get(return_type='id')`` (749)
* FIX: Only include regressors if they are TSV (752)
* FIX: ensure force_dense=True runs to_dense only on sparse variables (745)
* FIX: get unique, with conflicting meta-data (748)
* FIX: Clean up some deprecation and syntax warnings (738)
* ENH: Add ``pybids upgrade`` command (654)
* ENH: Add Lag transformation (759)
* ENH: Use indirect transformations structure (737)
* ENH: Add visualization for statsmodel graph (742)
* ENH: Permit explicit intercept (1) in Contrasts and DummyContrasts (743)
* ENH: Add meta-analysis model type (731)
* ENH: Contrast type is now test (733)
* REF: Use pathlib.Path internally when possible (746)
* REF: Remove group_by from edges and add filter (734)
* REF: Improved/refactored StatsModels module (722)
* MNT: Make sure codespell skips .git when run locally (787)
* MNT: LGTM.com recommendations (786)
* MNT: Better codespell configuration (782)
* MNT: Constrain formulaic version to 0.2.x . (784)
* MNT: Update versioneer: 0.18 → 0.20 (778)
* MNT: Add "codespell" tool to CI checks to catch typos sooner (776)
* MNT: Disable bids-nodot mode (769)
* MNT: Send codecov reports again (766)
* MNT: Set minimum version to Python 3.6 (739)

0.13.2

--------------------------------

Bug-fix release in the 0.13 series.

* FIX/TEST: gunzip regressors.tsv.gz, allow timeseries.tsv as well (767)
* FIX: run is required (762)
* MNT: Patch 0.13.x maint branch (763)

0.13.1

-----------------------------

Bug-fix release in the 0.13 series.

* ENH: Improve `get` performance (723)
* STY: Fix typos identified by codespell (720)
* TEST: dataset-level model spec retrieval (693)

0.13

-----------------------------

New feature release in the 0.13 series.

* FIX: Resample to n_vols for sampling_rate == 'TR' (713)
* FIX: Lazily load metadata, skip when missing data files are missing sidecars (711)
* FIX: Ensure indicator matrix is boolean when indexing in Split transformation (710)
* FIX: Correctly pair metadata file when creating association records (699)
* FIX: Resolve side-effects of new testfile in 682 (695)
* FIX: BIDSLayout -- TypeError: unhashable type: 'dict' (682)
* ENH: Add res/den entities to derivatives.json (709)
* ENH: Update datatypes (708)
* ENH: add more informative validation error message for dataset_description.json (705)
* ENH: Add flip, inv, mt, and part entities (688)
* CI: Run packaging tests on main repository only (696)
* CI: Migrate to GH actions (691)

0.12.4

----------------------------------

Bug-fix release in the 0.12.x series.

* FIX: Do not error when popping missing ``scan_length`` (679)

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