Pandas-genomics

Latest version: v0.12.1

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0.5.1

-------------------

* Update dependencies to fix doc building

0.5.0

-------------------

Enhancements
^^^^^^^^^^^^
* Add separate Series and DataFrame Accessors
* Speed up Plink file import
* Add prototype BiAllelic Model Simulator
* Add random genotype simulator
* Add Plink Output

0.4.0

-------------------

Enhancements
^^^^^^^^^^^^
* Updates to the backing structure of the GenotypeArray
* Added Variant quality scores
* Added Genotype quality scores

0.3.0

-------------------

Enhancements
^^^^^^^^^^^^
* Four encoding methods added to `GenotypeArray`: `encode_additive`, `encode_recessive`, `encode_dominant`,
and `encode_codominant`
* A `genotype` Series accessor has been added. Thus far it includes the encoding methods.
* Variants now track which allele is considered the reference allele

Tests
^^^^^
* I/O Tests are added for Plink and VCF. Note that VCF requires htslib, so tests are skipped on Windows
* Encoding tests added

Docs
^^^^
Improved.

0.2.0

-------------------

Tests
^^^^^
Pandas ExtensionArray tests are passing.
Note: a few can't pass until it's possible to define dtype as scalar
(See `Pandas 33825 <https://github.com/pandas-dev/pandas/issues/33825>`_)

Docs
^^^^
Some initial documentation added

0.1.0

-------------------

Initial Release

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