Msprime

Latest version: v1.3.1

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1.0.3

This is a bugfix release recommended for all users.

New features:
- Support for running full ARG simulations with gene conversion (1801, 1773, JereKoskela).
- Improved performance when running many small simulations (1909, jeromekelleher).
- Update to tskit C API 0.99.14 (1829).

Bug fixes:
- Fix bug in full ARG simulation with missing regions of the genome, where ARG nodes were not correctly returned. (1893, jeromekelleher, hyl317)
- Fix memory leak when running sim_ancestry in a loop (1904, 1899, jeromekelleher, grahamgower).
- Fix printing small values in rate maps (1906, 1905, petrelharp).

1.0.2

Minor feature release with improved Demes support and a few small bugfixes.

New features:
- Support for Demes input and logging in the msp simulate CLI (1716, jeromekelleher).
- Add Demography.to_demes method for creating a Demes demographic model from an msprime demography (1724, grahamgower).
- Improved mapping of Demes models to Demography objects (1758, 1757, 1756 apragsdale).
- Improved numerical algorithms in DemographyDebugger (1788, grahamgower, petrelharp).

Bugfixes:
- Raise an error if running full ARG simulations with gene conversion (1774).

1.0.1

Minor feature release with experimental Demes support.

- Change the semantics of Admixture events slightly so that ancestral populations that are inactive, are marked as active (1662, 1657, jeromekelleher, apragsdale)

- Initial support for Demes via the ``Demography.from_demes`` method. (1662, 1675, jeromekelleher, apragsdale, grahamgower)

1.0.0

This is a major update recommended for all users. Please see the [changelog](https://tskit.dev/msprime/docs/stable/CHANGELOG.html) for details.

1.0.0b1

Beta release for testing. See https://tskit.dev/msprime/docs/latest/CHANGELOG.html for notes.

1.0.0a6

Sixth alpha for testing. Includes packaging updates.

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