Metawibele

Latest version: v0.4.7

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0.4.1

* Fixed issues when running interproscan with all analyses
* Updated requirements for install
* Added a new module to check install
* Fixed issue when running utilities to prepare databases
* Fixed issue in config annotation types from interproscan
* Keep temp directory
* Updated description texts about configs
* Added final taxonomy file with stratified taxon info
* Fixed small issue in utilities

0.4.0

* Added "--tshld-diff" "--tshld-classified" setting to global config file
* Added "--min_variance" "--reference" for MaAsLin2 >= v1.5.1
* Added "--global-config" option for taking the user provided global config file
* Added time stamp for each processing step
* Added default setting for uniref database and mutiple options for setting up the DB
* Added option for downloading demo database

0.3.9

* Added options for msp-based taxonomy assignment "--tshld-diff" "--tshld-classified"
* Renamed the name of config option for taxonomy assignment
* Fixed option setting for interproscan
* Added option for FDR correction
* Fixed issue when preprocessing contigs
* Fixed warnings when summarizing interproscan output

0.3.8

* Added bowtie2 options "--very-sensitive"
* Fixed issue of summarizing uniref annotations and contig sequences

0.3.7

* Added functions for downloading databases
* Added binary filtering for unsupervised prioritization
* Added config for interproscan executable file
* Fixed issue when formatting assembled protein sequences

0.3.6

* Make input/output options available for metawibele on the command line instead of the config file
* Add options for dependent files for each individual step
* Report all DDIs and microbe-human DDIs
* Fixed errors when running DDI-based annotations

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