Metapredict

Change:
Added functionality to generate graphs using a Uniprot ID as the input from command line. Added functionality to predict disorder domains. Added functionality to predict/graph disorder and predict disorder domains using a Uniprot ID from Python. Updated tests to include testing new functionality.

Change:
Added functionality to predict or graph a disordered sequence from the command line by directly inputting the sequence. This can only do one sequence at a time and does not save the disorder values or graph. It is meant to provide a very quick and easy way to check something out.

Change:
Added functionality to specify the horizontal lines that appear across the graphs rather than only having the option of having the dashed lines appear at intervals of 0.2. This functionality is in both Python and the command line.

Change:
Updated the network with a newly trained network (using the same dataset as the original) that is slightly more accurate.

Reason:
I am always trying to find ways to make metapredict more accurate. When I manage to make the predictor better, I will update it.

Change:
Bug fix that could result in prediction values to six decimal places in some scenarios

Change:
Changed titles for graphs generated by ``metapredict-graph-disorder`` to be 14 characters instead of 10. This is reflected in the title graph and the saved files.

Reason:
The 10 character save file was occasionally the same for multiple proteins. This resulted in the inability to discern which protein corresponded to which graph and could result in overwriting previously generated graphs. The 14 characters should be long enough to keep unique names for all proteins being analyzed.

Change:
Fixed bug that could result in crashing due to short fasta headers.

Change:
Number of decimals in predictions was reduced from 6 to 3.

Reason:
It is not necessary to have accuracy out to 6 decimal places.

Change:
Added functionality to use . to specify current directory from command line.

Reason:
Improve functionality.

Change:
-DPI flag changed to -dpi in command line graphing function

Reason:
It was annoying to have to do all caps for this flag.

Change:
The ``predict-disorder`` command is now ``metapredict-predict-disorder`` and the ``graph-disorder`` command is now ``metapredict-graph-disorder``

Reason:
This will help users be able to use auto complete functionality from the command line using tab to pull up the graph or predict disorder commands while only having to remember metapredict.

Change:
The output for `.csv` files will now have a comma space between each value instead of just a comma.

Reason:
Improve readability.