Matflow

Added

- Add input mapper for writing the `numerics.config` file.

Changed

- Moved function `main.read_damask_hdf5_file` to `damask-parse` as `readers.read_HDF5_file`.
- Moved function `utils.get_HDF5_incremental_quantity` to `damask-parse` as `utils.get_HDF5_incremental_quantity` (and fixed use of correct Numpy function for "sum_along_axes" transform.)

Added

- Add support for specifying orientation and model coordinate systems with respect to e.g. RD/TD/ND.
- Add phase label attribute to `microstructure_seeds` and add `phase_labels` and `grain_phase_label_idx` to `volume_element`.

Changed

- Function `write_damask_material` updated to reflect upstream changes.

Changed

- Add `image_axes` argument to function mapper function that generates an RVE via 2D microstructure extrusion: `volume_element_from_microstructure_image`.

Fixed

- Synchronise `from_damask_parse` functions.

Changed

- Add unit cell alignment to `orientations` dict item in `tesr_to_volume_element` function.