Gseapy

Latest version: v1.1.3

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1.0.4

Major:
* Fixed critical bug 190. The wrong output of Lead genes and heatmap are fixed when call gsea with permutation_type = 'gene_set'
Others
* dotplot visualization improvement
* add new keyword `correl_norm_type` to `ssgsea()`

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.3...v1.0.4

1.0.3

Fix issues with

- biomart return status 182
- enrichr gmt output name 181
- logging's log file 180

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.2...v1.0.3

1.0.2

Bump verision

- add more control for dotplot x,y axis order

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.1...v1.0.2

1.0.1

Minor improvement

* Add `enrichment_map` function to export GSEApy results to `cytoscape`, `networkx` etc. 147
* Refactor `DotPlot` class to unify `dotplot`, `barplot`, `enrichment_map`.
* Fix dimension when only one significant enriched pathway is left for `dotplot`, ` barplot` 175
* `ringplot` has been deprecated. Just use `dotplot` instead.
* Minor improvements for `heatmap`.


**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v1.0.0...v1.0.1

1.0.0

GSEApy is published in [*Bioinformatics*]( https://doi.org/10.1093/bioinformatics/btac757) !


New Features:

- Use `Github Actions` to build binaries automatically
- Add [scRNA-seq tutorial](https://gseapy.readthedocs.io/en/latest/singlecell_example.html)
- Add warnings for duplicated values in the ranking list
- Add Scientific Palettes
- Fix missing ax in barplot ax 171
- Fix other minor issues

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v0.14.0...v1.0.0

0.14.0

&128640; This version further improves the speed of calculation.

New features:
- GSEA, ssGSEA speed up 10x than NumPy implementation (<=0.10.8)
- add `read_gmt` function to parse gmt file.
- add `get_library` function to download enrichr library and return a dict
- add `enrich` function to make over-representation analysis less confusing when using `enrichr`
- biomart API speedup: bioservices dependency is no longer needed.



Bug fixed
- dotplot, ringplot now supports GSEA results

**Full Changelog**: https://github.com/zqfang/GSEApy/compare/v0.13.0...v0.14.0

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