Dms-variants

Latest version: v1.6.0

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0.8.8

------
Added
+++++
- ``CodonVariantTable.from_variant_count_df`` accepts ``extra_cols`` parameter.

0.8.7

-----
Fixed
+++++
- Fixed datatype for ``maxpoints`` default in ``barcodes.rarefyBarcodes``

Changed
+++++++
- Discourage and stop testing multiple latent phenotypes.
- Remove from docs and stop testing ``predict_variants.ipynb`` as this doesn't seem to be a common use case.

0.8.6

-----
Fixed
+++++
- Updated compilation arguments for Windows.

- Pass Travis tests.

0.8.5

------

Added
+++++
- ``pdb_utils`` module with ``reassign_b_factor`` function.

0.8.4

-----

Added
+++++
- Classify amino-acid mutations as single-nucleotide accessible: added ``constants.SINGLE_NT_AA_MUTS`` and ``utils.single_nt_accessible``.

Fixed
+++++
- Made compatible with ``biopython`` 1.78 by fixing import of ``ambiguous_dna_values`` to be from ``Bio.Data.IUPACData``.

0.8.3

-----

Fixed
+++++
- Unpin ``plotnine`` now that `this bug <https://github.com/has2k1/plotnine/issues/403>`_ fixed.

Changed
+++++++
- Only test on Python 3.7.

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