Denovonear

Latest version: v0.10.4

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0.9.9

- fixed bug reassigning genomic sequence for transcripts on reverse strand

0.9.8

- fix flipping allele strand bug for genes on -ve strand
- fix bug when GTF coords are single digit

0.9.6

- fixed bug picking the longest transcript containing the most de novos
- avoid errors with genes lacking suitable protein coding transcripts

0.9.5

- various speedups to Transcripts, and checking their consequence
- fixed bug when loading genes with problematic transcripts

0.9.2

sped up the clustering test by making geometric mean slightly faster, and using a more optimal weighted sampling function call which only returns the site position.

0.9.0

- can load genes from Gencode annotation GTFs and genome fasta files
- still uses ensembl as backup

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