Cwltool

What's Changed
* Drop Python 3.6 by mr-c in https://github.com/common-workflow-language/cwltool/pull/1593
* adjustment for docker build by mr-c in https://github.com/common-workflow-language/cwltool/pull/1595

**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20220116183622...3.1.20220117131913

New Features
* Initial support CUDARequirement extension by tetron in https://github.com/common-workflow-language/cwltool/pull/1581
* allow additional pathname characters in strict mode by mr-c in https://github.com/common-workflow-language/cwltool/pull/1579
* _terminate_processes for non-docker processes, like nodejs by mr-c in https://github.com/common-workflow-language/cwltool/pull/1577
* Add helpful error message when a program is terminated by a (Unix) signal, such as a segfault by gmloose in https://github.com/common-workflow-language/cwltool/pull/1569

Bug fixes
* expand stdin shortcut even when an ID is preset by mr-c in https://github.com/common-workflow-language/cwltool/pull/1592
* Fix --print-targets to pass inherited reqs. by mr-c in https://github.com/common-workflow-language/cwltool/pull/1580
* Protect ruamel from blank comment strings when making templates by leipzig in https://github.com/common-workflow-language/cwltool/pull/1390

What's Changed
* WSL2 clarification by mr-c in https://github.com/common-workflow-language/cwltool/pull/1567
* remove unnecessary encodes by mr-c in https://github.com/common-workflow-language/cwltool/pull/1575
* add better string representation for Process objects by mr-c in https://github.com/common-workflow-language/cwltool/pull/1571
* Remove noisy exception when the monitored process exits quickly by mr-c in https://github.com/common-workflow-language/cwltool/pull/1584
* Update how to setup pip environment by manabuishii in https://github.com/common-workflow-language/cwltool/pull/1017
* remove an Any type hint by mr-c in https://github.com/common-workflow-language/cwltool/pull/1587
* GA: simplify pip caching by mr-c in https://github.com/common-workflow-language/cwltool/pull/1589

Dependency updates
* Bump mypy from 0.910 to 0.920 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1574
* Update rdflib requirement from <6.1,>=4.2.2 to >=4.2.2,<6.2 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1576
* Bump mypy from 0.920 to 0.921 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1578
* Bump mypy from 0.921 to 0.930 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1582
* Update ruamel-yaml requirement from <0.17.18,>=0.15 to >=0.15,<0.17.20 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1583
* Update ruamel-yaml requirement from <0.17.20,>=0.15 to >=0.15,<0.17.21 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1585
* Bump mypy from 0.930 to 0.931 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1588

New Contributors
* gmloose made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1569
* manabuishii made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1017
* leipzig made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1390

**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20211107152837...3.1.20220116183622

What's Changed
* --print-targets: support embedded step processess by mr-c in https://github.com/common-workflow-language/cwltool/pull/1564
* --print-input-deps: support secondaryFile resolution by mr-c in https://github.com/common-workflow-language/cwltool/pull/1565

Misc
* Update README by ALuesink in https://github.com/common-workflow-language/cwltool/pull/1561
* Update ruamel-yaml requirement from <0.17.17,>=0.15 to >=0.15,<0.17.18 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1559
* cwltool.Dockerfile: only install one version of pyparsing by mr-c in https://github.com/common-workflow-language/cwltool/pull/1562

New Contributors
* ALuesink made their first contribution in https://github.com/common-workflow-language/cwltool/pull/1561

**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20211104071347...3.1.20211107152837

What's Changed
* Call fsaccess.realpath before comparing paths in _relocate. by tetron in https://github.com/common-workflow-language/cwltool/pull/1560
(Also bumps minimum schema-salad version to 8.2.20211104054942)


**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20211103193132...3.1.20211104071347

What's Changed
* Bump eWaterCycle/setup-singularity from 6 to 7 by dependabot in https://github.com/common-workflow-language/cwltool/pull/1554
* skip pyparsing 3.x to fix pydot; rdflib's sparql parsing by mr-c in https://github.com/common-workflow-language/cwltool/pull/1557
* detect circular workflow dependencies by lijiayong in https://github.com/common-workflow-language/cwltool/pull/1543
* --single-process inherit reqs & hints; support sub-workflows by mr-c in https://github.com/common-workflow-language/cwltool/pull/1558


**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20211020155521...3.1.20211103193132

What's Changed
* cwltool.Dockerfile fix by mr-c in https://github.com/common-workflow-language/cwltool/pull/1549
* outdir can be any valid URI ; add test for this by tetron in https://github.com/common-workflow-language/cwltool/pull/1552
* GitHub Actions: Separate concurrency groups by mr-c in https://github.com/common-workflow-language/cwltool/pull/1553


**Full Changelog**: https://github.com/common-workflow-language/cwltool/compare/3.1.20211019185001...3.1.20211020155521