- New option to pull out contigs of interest (eg a mitochondrion from a eukaryote assembly) - New option to discard unmapped reads instead of including them in the assembly - New option to choose minimum read length - Some sanity checking of input
0.14.1
Rewrote clean stage to remove more contigs.
0.14.0
Added option to let user choose the kmer(s) when running assemblies with SPAdes. Was previously hard-coded.
0.13.2
Fixed bug where in rare cases contigs of size ~30-100kb were not recognised as circular.
0.13.1
Bug fix to "minimus2" task. If minimus2 died on initial merge, then the whole script died. Fixed so that it carries on.
0.13.0
- added automated (slightly modified) implementation of PacBio's protocol using minimus2. - tweaked nucmer options to improve results