- New benchmark feature to test each release using biolog and gene essentiality data. - Updated RefSeq database to release 201. - Dropped support for GenBank.
- Dropped support for Python 2 - Switched to ReFramed - Using entry points in setup.py (easier windows installation)
1.2.0
This release introduces Python 3 compatibility.
For the moment, both Python 2 and Python 3 will be supported (we may drop support for Python 2 at some point in the future).
1.1.0
New features in this release:
- Debug mode with *--debug* (outputs all intermediate computations to flat files for debug purposes) - Support for experimental constraints (with *--soft* and *--hard*)
Plus some minor bug fixes.
1.0.0
Multiple changes:
* new biomass templates (gram positive, gram negative) * allow external biomass library * auto-normalize biomass weight to 1 gram * further manual curation of universal model * generation of microbial community models * detailed online documentation