Added:
- testing for fastq files, changing input of fasta file to match README documentation
- Travis CI testing; empty `__init__.py` file that is required to run `pytest` for CI
Updated:
- 11: schema for Enteritidis to 0.7.0.
- tests
- readme; install instructions
Fixes:
- 4: added version to `SCHEME_FASTAS` in `utils.py` and added to `Subtype` and `pd.DataFrame`
- 3: check `sys.argv` length on `main.py` commandline execution and print help on no args
- 6: Changing all `*_total` fields to `*_expected`
- 7: Filtering out unwanted columns in FASTA output
- 10: `>` to `>=` in `find_inconsistent_subtypes` in `utils.py`; Added tests for `enteritidis` subtyping scheme