Wsiprocess

Latest version: v1.1.1

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1.1.1

- fixed wsidataset for pytorch (https://github.com/tand826/wsiprocess/commit/57c2376555bed6ce11fced9638055b2929916433)
- hotfix of an argument of wp.annotation (https://github.com/tand826/wsiprocess/commit/66201c44aa60f84f1dd8b0d16d850a20103c71ed)

1.1.0

- on_annotation parameter can be set flexibly (https://github.com/tand826/wsiprocess/commit/fa915e5865254e0bccd3875a111419d5031e3519, https://github.com/tand826/wsiprocess/commit/b583731573be7ee799fab82bcc96d97d90b9d410)
- save images as jpg instead of png (https://github.com/tand826/wsiprocess/commit/fd22b9bbf951e5f1867d6f4f822d3f9fc80eb936)
- verbosity state fixed (https://github.com/tand826/wsiprocess/commit/d605591417ca79e1f99ac8d43e51a3bd2468e1c6)
- NDP.View2-styled annotation enabled (https://github.com/tand826/wsiprocess/commit/2afa34334b75d4e7d8f210a3c260cca571daf13d, https://github.com/tand826/wsiprocess/commit/0c2f6d8efe5e23fb825395b66580028dfb668dbe)

1.0

- mask can be resized of RAM is not enough
- wsiprocess.rule.Rule can take also as a dict
- the magnification setting is enabled
- result coordinations are saved as csv
- geojson styled annotation is enabled
- pytorch dataset helper implemented
- default output extension changed to jpg
- documentation page overhauled

0.9

- foreground extract function (annotation.make_foreground_mask) can take lambda functions

0.8

- Method name "none" is switched with "evaluation"
- verbose option is available for showing patching progress

wsiprocess evaluation sample.tiff --verbose or -ve

- Backend is switched with openslide. If pyvips is set to be the backend in slide.py, wsiprocess handles WSIs with pyvips.

0.7

- only if --extract_foreground is set, wsiprocess extracts patches from the WSI
- translate dot annotation to a small bounding box
- wsiprocess can handle SlideRunner annotations (bnapora)
- wsiprocess can handle QuPath annotations

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