Toulligqc

Latest version: v2.6

Safety actively analyzes 621751 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 1 of 5

2.6

* Support for the POD5 format.
* Handling of barcoding in BAM and FASTQ files.
* Support for Fast5 .tar files without compression.
* Fixed an issue with BAM tags extraction.
* Fixed the issue with the 'passes_filtering'-only sequencing summary.
* Fixed the bug related to numpy.bool with numpy version 1.24 or later.
* Improved compatibility with pandas 2.0.

2.5

* Fixed error when no failed reads were found (Issue 20).
* Fixed error when unclassified barcodes were missing.
* FASTQ and BAM files can now be used instead of the sequencing summary file.
* Added the ability to specify a barcode range (e.g., `--barcodes barcode01:barcode48`).

2.4

* In over time graphs (read length, PHRED score and translocation speed), now fill the gaps for the 75% and 25% to avoid filling glitch.
* Fix 2D density plot title style.
* Fix error when a summary file with barcode information was provided in addition of barcoding files (Issue 17), now the barcode files will be skipped with a warning message in case summary file with barcode information is provided.
* Add the selected speed and sample frequency of the run in the "Run statistics" table of the ToulligQC report

2.3

* Numpy 1.24 is now supported (thanks to Sean Black).
* Scatter plot of read length vs PHRED score has been replaced by a 2D density plot.
* Add bases per barcode distribution graphs.

2.2.3

* Fix error when no Fast5 file is found in a directory provided as argument. Now throw an understandable error message.

2.2.2

* Fix when multiple sequencing summary barcode files were available, the type of the 'barcode_arrangement' column in the dataframe was not correct.

Page 1 of 5

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.