Tobias

- Fixed error with 'matplotlib.cbook.mplDeprecation', which is found at 'matplotlib.MatplotlibDeprecationWarning' in matplotlib>=3.8. TOBIAS now checks for the matplotlib version when filtering warnings.
- Improved error messages when reading corrupt bigwig file in BINDetect

- Pinned adjustText<0.8 due to Attribute error (116 and 182)
- Solved std::bad_alloc error in BINDetect due to 0-counts in motifs (192)
- Solved deprecation error for pypdf2: PdfFileMerger -> PdfMerger and set lower limit for pypdf version
- Fixed BINDetect error causing "Falling back to 'constant' normalization" arising from "ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions." due to upgrade of numpy.

- Fixed deprecation errors for writer.save() and DataFrameGroupBy.mean
- Improved error when .bed.gz is input to regions.from_bed (180)
- Fix error in plotting BINDetect volcano for many motifs (181)

- Fixed True/False highlighted column from 0.14.0 to include bindetect excel output as well.
- Added '--bias-pkl' option to ATACorrect (174)

- Added '--cmap' option in PlotHeatmap (130)
- Added 'drop-chrom' in ATACorrect to gain more control over which chromosomes should be excluded (142)
- Added a True/False "<cond1>_<cond2>_highlighted" column in bindetect_results.txt/.xlsx files. These columns mark the highlighted TFs for each volcano plot.
- Added check for empty '--TFBS' files in CreateNetwork

- Fix of bug in utilities:match_lists leading to false list-to-list assignment in PlotChanges (110)
- Fixed bug in creating gimmemotifs object
- Integrated checks related to gimmemotifs, pandas and python versions in ClusterMotifs
- Added check for fonts and 'gs' in PlotTracks
- Fixed bug for --track-off in TOBIAS ATACorrect