Thoipapy

Latest version: v1.2.0

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1.1.2

* fix parsing of malformed xml files from ncbi-blast containing "CREATE_VIEW" string.
* add more minimal requirements.txt

1.1.0

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* update settings files

1.0.1

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* fix missing psutil dependency
* fix biopython syntax to remove warning message

1.0.0

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* added new prediction features including conservation calculated with rate4site
* removed blind test TMDs from the training dataset
* added a feature selection pipeline, including the removal of duplicate features, and selection of best predictive features
* added automatic tuning of machine-learning predictor
* excluded putative distant homologues from training in each iteration of leave-one-out validation
* added scripts for conducting bootstrapped t-test, comparing interface and non-interface residues
* extended the output for a single file/experiment to include the mean EC50 values for replicates with identical sample names (issue 8)

0.0.3

0.0.1

First PyPI release.

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