Version 2 of the StaPH-B Toolkit provides an overhaul of how workflows are packaged and containerized applications are accessed. Version 2 allows for dynamic fetching of the workflows so both the latest versions as well as previous versions of the workflows are always available. The Toolkit also now has the ability to select specific versions of Nextflow allowing a greater control over how the workflows are run. Updates to the Toolkit's application list and workflows are now served through GitHub making it easier for workflows and applications to be added without needing to update the toolkit itself. Additionally there have been some UI tweaks to make using applications and tools a bit easier.
Overall version 2 seeks to improve access to workflows by improving both the user experience and reducing the effort of contributors.
Changelog
- Combined the `staphb-tk` and `staphb-wf` commands into a single command: `staphb-tk`
- Incorporated workflow version selection and nextflow version selection
- Added workflow help
- Improved UI for readability and accessibility
- Updated documentation
- Many minor process tweaks