Soxspipe

* **ENHANCEMENT:** the calibration lamp name is now added to the sof filenames, and hence the product file names
* **ENHANCEMENT:** file summary now shows which calibration lamps are used
* **ENHANCEMENT:** adding bad-pixel maps for SOXS detectors (currently blank)
* **ENHANCEMENT:** pipeline can select default settings for either soxs or xsh (previously there was only one default settings file)
* **FIXED**: SOXS VIS darks are now getting split by EXPTIME in data-organiser

* **FEATURE:** the data-organiser has been 'plumbed' to work with SOXS data (will now work with Xshooter or SOXS data).
* **ENHANCEMENT:** clipping of entire MPH set based on their combined RMS scatter from their predicted locations. MPH sets with large scatter are consider poor and removed before polynomial fitting.
* **ENHANCEMENT:** option added to relevant recipes settings to allow toggling of fitting and subtracting of intra-order scattered background light (`subtract_background`)
* **REFACTOR**: added arm and lamp to QC plot titles.
* **REFACTOR** recipe settings can now be set independently for each arm.
* **REFACTOR:** fitting of the scatter background light is now much more robust.
* **REFACTOR:** The scattered light background images are now saved as QC PDFs instead of FITS frames.
* **FIXED**: fixed issue where logs were getting duplicated.
* **FIXED**: the scaling and stitching together of the UVB D2 and QTH lamp flats.

* a `bootstrap_dispersion_solution` has been added to the advanced settings. It this is set to True, the pipeline will attempt to bootstrap the initial dispersion solution (using the static line list) with lines from a line-atlas. The line-atlas contains more lines and lines with more precise wavelength measurements.
* **FEATURE**: a new 'reducer' module and terminal command replace the old `_reduce_all/sh` script. This allows the data-organiser to dynamically self-correct if a recipe fails.
* **ENHANCEMENT:** robustness fixes and updates.
* `pinhole_fwhm_px_min` and `pinhole_fwhm_px_max` settings added to `soxs-spatial-solution`. Detected pinholes with a FWHM below/above these values get clipped.
* **FIXED**: The bad-pixel mask from the noise map of the mbias frame is now injected mbias product. The Xshooter UVB electron trap is now clearly visible in the master bias quality extension.
* `mph_line_set_min` setting added to `soxs-spatial-solution`. Full multi-pinholes sets (same arc line) with fewer than mph_line_set_min lines detected get clipped.

* **FIXED**: bug fix logger

* **FIXED**: bug fix in collecting settings files from the default location

* **ENHANCEMENT:** the instrument name is now included in the SOF & product filename.
* **ENHANCEMENT:** setting bad pixels to zero in sky-subtracted product frames.
* **FIXED**: blocking filters now taken into account when building the master-flats and determining the order-edges.
* **FIXED**: master flats taken with blocking filters are no longer matched with multi-pinhole frames fro the spatial solution recipe.
* **FIXED**: master flats with identical slit-widths now matched against science frames within the data-organiser when building SOF files.
* **FIXED**: the order of the columns in the extracted & merged spectrum tables is now WAVE, FLUX (was FLUX, WAVE).
* **FIXED**: specutils dependency added to conda-forge requirements.