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Latest version: v0.2.1

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0.2.1

Bug fix

0.2.0

The `updater.py` script is now deprecated due to changes in the HIVdb website.

joss
* Added `CONTRIBUTING.md` file
* Added `/paper` containing manuscript files for submission to [JOSS](http://joss.theoj.org/)

0.1.2

* package includes NucAmino binaries
* fixed subtyping
* parsing JSON output from NucAmino to address full-length pol issue
* writes temporary alignment file to screen for illegal characters
* separating alignment data by gene
* wrote detailed installation instructions

v.0.0.2
- ported HIV subtyping from HIVdb pipeline
- setup script sets user permissions for system installation to allow users to access downloaded resources
- moved `gui.py` to a separate branch as a work in progress
- extensive refactoring and application of PEP8 code style
- byte string conversion to accommodate Python 3.5
- moved FASTA parsing to `utils.py`
- fixes 44, 42

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