Scvi

Latest version: v0.6.8

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0.6.8

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* scvi is now deprecated, please uninstall and install scvi-tools (available shortly)

0.6.7

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* downgrade anndata>=0.7 and scanpy>=1.4.6 `galen`_
* make loompy optional, raise sckmisc import error `adam`_
* fix PBMCDataset download bug `galen`_
* fix AnnDatasetFromAnnData _X in adata.obs bug `galen`_

0.6.6

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* add tqdm to within cluster DE genes `adam`_
* restore tqdm to use simple bar instead of ipywidget `adam`_
* move to numpydoc for doctstrings `adam`_
* update issues templates `adam`_
* Poisson variable gene selection `valentine-svensson`_
* BrainSmallDataset set defualt save_path_10X `gokcen-eraslan`_
* train_size must be float between 0.0 and 1.0 `galen`_
* bump dependency versions `galen`_
* remove reproducibility notebook `galen`_
* fix scanVI dataloading `pierre`_

0.6.5

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* updates to totalVI posterior functions and notebooks `adam`_
* update seurat v3 HVG selection now using skmisc loess `adam`_

0.6.4

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* add back Python 3.6 support `adam`_
* get_sample_scale() allows gene selection `valentine-svensson`_
* bug fix to the dataset to anndata method with how cell measurements are stored `adam`_
* fix requirements `adam`_

0.6.3

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* bug in version for Louvian in setup.py `adam`_

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