Sbpack

Latest version: v2022.3.16

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2024.02.02rc1

Quick fix to sbpack positional arguments

2024.01.04rc1

What's Changed
* Feature/sample sheet support by pavlemarinkovic in https://github.com/rabix/sbpack/pull/79

- Added support for autogenerating sample sheet function(s) for Nextflow app wrapper.
- sbpack will now avoid overwriting previous version of sb_nextflow_schema.yaml
- Enums will be better parsed and generated
- New --auto mode tries to locate as many files and inputs for generating the app automatically
- The logic for uploading the app code package and the app itself has been updated. It now first tires to create the app wrapper, and if it succeeds then tries to upload the code package.


**Full Changelog**: https://github.com/rabix/sbpack/compare/2023.11.9rc1...2024.01.04rc1

2023.11.9rc1

- `sbcopy` can now be used to copy apps between different environments. By using `--profile` argument, if two profiles are specified, the first will be used as the source (env where the app you want to copy is located) and the second as the target (env where the project you want the app to be copied to is located).
- "--sb-inputs", "--sb-outputs" and "--manual-validation" have been removed
- `--execution-mode` argument with two valid values (single-instance, multi-instance) has been added. This will set the hint on app level which will be taken into consideration when setting up a new draft task using the app.

2023.06.20rc1

This version brings with it a few updates:

- Ability to specify executor version though --executor-version for sbpack-nf. This will allow users to specify which executor version they want to use.
- Revision note customization through --revision-note. Users can now add customized revision notes.
- Ability to specify both input and output schema file separately in CWL or (tower.yml specification)[https://help.tower.nf/22.1/reports/overview/#reports-implementation]. This will allow users to use tower yml to define some of the workflow outputs.
- Manual validation option. Users can now initiate manual validation by using --manual-validation in the command line of sbpack-nf. This can make it easier to properly define what types certain ambiguous inputs are, without the need to edit the CWL schema.

2022.03.16

Minor fixes

2022.03.10

New commands to deploy Nextflow and WDL workflows to Seven Bridges platforms

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