Prophyle

Latest version: v0.3.3.1

Safety actively analyzes 613460 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 1 of 2

0.3.3.1

Update dependencies

0.3.3.0

New features:
* `prophyle footprint` for estimating the required memory footprint

Enhancements:
* Integer ranks
* fastapath renamed to path
* Improved tests
* Refactoring
* Updated docs
* ln tag added to outputs

Closed issues

* Unclassified reads are missing from the SAM output 324
* Re-running finished decompression damages .bwt 329
* Add prophyle footprint 322
* Add the ln tag 297
* propagation clean: Argument list too long 292

0.3.2.0

Fix many bugs and implement new features including

* Argument list too long (propagation) 301
* prophyle decompress – "tar: could not chdir to 'database/sparc1_k18'" 312
* No LCA computation in case of tie 315
* prophyle_assignment: not enough values to unpack (expected 2, got 1) 320
* RecursionError: maximum recursion depth exceeded while pickling an object 337
* Error: /bin/bash: /bin/cat: Argument list too long 350
* Add a param to stop after k-mer propagation 353

0.3.1.0

Improvements

* Download databases from Zenodo rather than from NCBI (in order to fix versions).
* Improve I/O error messages printed by `prophyle_assembler`.
* Improve ProPhyle code.

0.3.0.3

New

* Add `make help` to print a list of commands for developers
* Add `make coverage` to compute code coverage
* Add `make pylint` to run Pylint
* Add a Code of Conduct
* Add `prophyle compile -F` for forcing a recompilation

Improvements

* Specify recommended versions of dependencies for PyPI

0.3.0.2

Fixes

* Fix the order of SAM headers in the output of `prophyle classify`.

Page 1 of 2

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.