Plantcv

What's Changed
* Update PyPi deploy workflow to use OIDC authentication by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1424


**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.2...v4.2.1

What's Changed
* Enable multi label input by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1361
* 1363 floodfill function by maliagehan in https://github.com/danforthcenter/plantcv/pull/1364
* Documentation minor bug fixes by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1372
* Update spectral wavelengths for CropReporter datasets by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1374
* Update README.md with Deepsource badge by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1386
* add new function called detect_color_card by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1362
* added flexibility to handle rotation in color cards, consistent chip labeling regardless of orientation, and reduced number of input parameters. Pre-existing `pcv.transform.find_color_card` still exists but will be deprecated in the future.
* Bugfix/data wrangling update: Roi coord dtype cast by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1376
* too many leading '' for block comment by dhiraj-ms in https://github.com/danforthcenter/plantcv/pull/1402
* Removed whitespace surrounding docstring text by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1392
* Whitespace after "," by dhiraj-ms in https://github.com/danforthcenter/plantcv/pull/1399
* PTC-W0019 - Consider using literal syntax by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1408
* changing doc string conventions for deepsource best practices by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1391
* FLK-D200 by kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1393
* grouping imports per deepsource by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1396
* changing max linewidth in file by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1398
* changes for deepsource expecting 2 blank lines by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1401
* Deleted variable mask=mask by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1404
* removing redundant object specification by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1403
* Py w0069 by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1406
* docs: add mtwatso2-eng as a contributor for code by allcontributors in https://github.com/danforthcenter/plantcv/pull/1409
* changed comparison order per deepsource standards by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1394
* added line after docstring by AFis-245 in https://github.com/danforthcenter/plantcv/pull/1397
* docs: add AFis-245 as a contributor for code by allcontributors in https://github.com/danforthcenter/plantcv/pull/1410
* Replaced obs with _ by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1405
* Removing unused libraries by dhiraj-ms in https://github.com/danforthcenter/plantcv/pull/1407
* Update colorspaces.py add CMYK by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1390
* PYL-W0612 deepsource replace unused vars by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1395
* Remove old utility scripts by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1411
* Add metadata method by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1375
* Updated color correction tutorial by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/1415

New Contributors
* AFis-245 made their first contribution in https://github.com/danforthcenter/plantcv/pull/1397

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.0.1...v4.2

[](https://doi.org/10.5281/zenodo.8284894)

What's Changed
* Bug fix: collapse hierarchical headers for CSV files by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1350
* docs: add maldil as a contributor for code by allcontributors in https://github.com/danforthcenter/plantcv/pull/1351
* Update Points.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1352
* Bump upper version of NumPy by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1347
* Update matplotlib supported versions by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1353
* Update pandas supported versions by nfahlgren in https://github.com/danforthcenter/plantcv/pull/1354


**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v4.0...v4.0.1

New Contributors
* wurDevTim made their first contribution in https://github.com/danforthcenter/plantcv/pull/984
* afinit made their first contribution in https://github.com/danforthcenter/plantcv/pull/1210
* allcontributors made their first contribution in https://github.com/danforthcenter/plantcv/pull/1234
* dhiraj-ms made their first contribution in https://github.com/danforthcenter/plantcv/pull/1341

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v3.14.3...v4.0

What's Changed
* Fix ImportError in plantcv caused by change in skimage.feature function name by fbarbe00 in https://github.com/danforthcenter/plantcv/pull/998
* Fixed check for binary image by vektorious in https://github.com/danforthcenter/plantcv/pull/996
* Updated link and debug print to plot in texture_threshold.md by kmurphy61 in https://github.com/danforthcenter/plantcv/pull/1008
* Changed print to plot in analyze_shape.md by lacostag in https://github.com/danforthcenter/plantcv/pull/1012
* Update analyze_NIR_intensity.md by Stylopidae1793 in https://github.com/danforthcenter/plantcv/pull/1009
* Change print to plot in analyze color by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1017
* Changed print to plot in analyze_thermal_values.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1028
* Update save_matrix.md to remove quotations surrounding filename by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1010
* Typo fix to mask in thermal_hist by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1011
* Updated plot to print in analyze_boundary (vertical and horizontal) by leowlima in https://github.com/danforthcenter/plantcv/pull/1013
* Fixed typo in visualize_colorspace.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1014
* test PR, changed python versions listed for testing by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1015
* Changed print to plot in analyze_spectral.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1019
* changed print to plot in analyze_spectral by lacostag in https://github.com/danforthcenter/plantcv/pull/1020
* Changed print to plot in analyze_stem.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1023
* Update apply_mask.md by Stylopidae1793 in https://github.com/danforthcenter/plantcv/pull/1021
* Update PULL_REQUEST_TEMPLATE.md changed PR template link from stable branch to latest branch. by zeeuqsze in https://github.com/danforthcenter/plantcv/pull/1022
* 1018 add install pytest cov to contribution guide by maliagehan in https://github.com/danforthcenter/plantcv/pull/1024
* Scipy ndimage namespace fix by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1025
* Update print to plot gaussian_blur.md by leowlima in https://github.com/danforthcenter/plantcv/pull/1026
* changed print to plot in apply_mask by lacostag in https://github.com/danforthcenter/plantcv/pull/1027
* Changed print to plot in watershed.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1032
* change print to plot in acute_vertex.md.md by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1033
* changed white balance print to plot by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1034
* Update_print to plot_gaussian_threshold.md by leowlima in https://github.com/danforthcenter/plantcv/pull/1035
* removed an 'else: pass' from analyze_object by joshqsumner in https://github.com/danforthcenter/plantcv/pull/1036
* Update HistEqualization by leowlima in https://github.com/danforthcenter/plantcv/pull/1038
* update print to plot in watershed by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1039
* Changed print to plot in erode.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1040
* Update canny_edge_detect.md by jmgordon1223 in https://github.com/danforthcenter/plantcv/pull/1041
* changed print to plot in cluster_contours by lacostag in https://github.com/danforthcenter/plantcv/pull/1042
* Change print to plot in skeletonize.md by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1043
* Update_image_add_print to plot by leowlima in https://github.com/danforthcenter/plantcv/pull/1044
* update print to plot in triangle_threshold by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1045
* changed print to plot in check_cycles by lacostag in https://github.com/danforthcenter/plantcv/pull/1046
* change print to plot transform rescale by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1047
* Update_image_subtract by leowlima in https://github.com/danforthcenter/plantcv/pull/1048
* Changed print to plot in fill_segments.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1089
* Update_naive_bayes_classifier by leowlima in https://github.com/danforthcenter/plantcv/pull/1088
* Updated print to plot in find_objects by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1087
* updated print to plot in get_nir by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1086
* Update_median_blur by leowlima in https://github.com/danforthcenter/plantcv/pull/1085
* updated print to plot in image_add by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1084
* Update_Mean_Threshold by leowlima in https://github.com/danforthcenter/plantcv/pull/1083
* update print to plot in image_subtract by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1082
* Changed print to plot in fill_holes.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1081
* Changed print to plot in canny_edge_detect.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1080
* Changed print to plot in check_cycles.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1079
* Changed print to plot in closing.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1078
* update print to plot in invert by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1077
* Changed print to plot in cluster_contours_splitimg by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1076
* change print to plot stdev_filter.md by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1073
* Update_logical_or_print to plot by leowlima in https://github.com/danforthcenter/plantcv/pull/1067
* Changed print to plot in crop_position_mask.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1066
* changed print to plot in roi_multi by lacostag in https://github.com/danforthcenter/plantcv/pull/1065
* changed print to plot in roi_from_binary_image by lacostag in https://github.com/danforthcenter/plantcv/pull/1064
* Update_logical_and_print to plot by leowlima in https://github.com/danforthcenter/plantcv/pull/1062
* Changed print to plot in crop.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1061
* change print to plot in roi_ellipse by lacostag in https://github.com/danforthcenter/plantcv/pull/1060
* changed print to plot in spectral_index by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1059
* Update_laplace_filter_print to plot by leowlima in https://github.com/danforthcenter/plantcv/pull/1058
* change print to plot in roi_circle by lacostag in https://github.com/danforthcenter/plantcv/pull/1057
* Change print to plot spatial_clustering.md by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1056
* Changed print to plot in custom_range_threshold.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1055
* Changed print to plot in dilate.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1054
* Update_landmark_reference_pt_dist by leowlima in https://github.com/danforthcenter/plantcv/pull/1053
* changed print to plot in stdev_filter by sdkenney42 in https://github.com/danforthcenter/plantcv/pull/1052
* Change print to plot in distance_transform.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1051
* Change print to plot to sobel_filter by lchavez037 in https://github.com/danforthcenter/plantcv/pull/1050
* Update closing.md by jmgordon1223 in https://github.com/danforthcenter/plantcv/pull/1049
* Changed print to plot in extract_wavelength.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1094
* Changed print to plot in gaussian_threshold.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1095
* Changed print to plot in logical_xor.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1096
* Changed print to plot in nonuniform_illumination.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1097
* Changed print to plot in object_composition.md by JoeDuenwald in https://github.com/danforthcenter/plantcv/pull/1098

New Contributors
* fbarbe00 made their first contribution in https://github.com/danforthcenter/plantcv/pull/998
* kmurphy61 made their first contribution in https://github.com/danforthcenter/plantcv/pull/1008
* lacostag made their first contribution in https://github.com/danforthcenter/plantcv/pull/1012
* Stylopidae1793 made their first contribution in https://github.com/danforthcenter/plantcv/pull/1009
* sdkenney42 made their first contribution in https://github.com/danforthcenter/plantcv/pull/1017
* JoeDuenwald made their first contribution in https://github.com/danforthcenter/plantcv/pull/1028
* zeeuqsze made their first contribution in https://github.com/danforthcenter/plantcv/pull/1010
* leowlima made their first contribution in https://github.com/danforthcenter/plantcv/pull/1013
* joshqsumner made their first contribution in https://github.com/danforthcenter/plantcv/pull/1015

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v3.14.2...v3.14.3

What's Changed
* Add gif to gitattributes to treat as binary by nfahlgren in https://github.com/danforthcenter/plantcv/pull/935
* Rename main branch by nfahlgren in https://github.com/danforthcenter/plantcv/pull/940
* Update code conduct by nfahlgren in https://github.com/danforthcenter/plantcv/pull/941
* Enable actions release4 by nfahlgren in https://github.com/danforthcenter/plantcv/pull/942
* Pin matplotlib to < 3.6 by nfahlgren in https://github.com/danforthcenter/plantcv/pull/959
* Add wavelength means Observation to analyze_spectral function by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/964
* Added compatibility for BIP data format of hsi images in read_image by vektorious in https://github.com/danforthcenter/plantcv/pull/972
* Update installation.md by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/977
* Morphology segment combine update by HaleySchuhl in https://github.com/danforthcenter/plantcv/pull/933

New Contributors
* vektorious made their first contribution in https://github.com/danforthcenter/plantcv/pull/972

**Full Changelog**: https://github.com/danforthcenter/plantcv/compare/v3.14.1...v3.14.2