Phykit

Latest version: v1.19.4

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- Saturation function forces y-intercept to be zero when calculating slope

- Saturation function now uses uncorrected distances instead of pairwise identities

- Verbose pairwise identity reporting separates pairwise identities by tabs and not a dash

- Added function to test for site-wise compositional biases in an alignment. See function compositional_bias_per_site.

- Added function to estimate site-wise evolutionary rate in an alignment. See function evolutionary_rate_per_site.

- Added function to recode alignments based on 8 different recoding schemes (7 for amino acids;
1 for nucleotides). See function recode

Has known vulnerabilities