Phenopype

-----
bugfix:
- fix draw QR-code mask
- fix new faster thresholding
- new plugin: predict_SAM uses the fastSAM model for prompt based image segmentation
- new function: draw_comment prints comments added via write_comment or detect_QRcode
- changed dependency: pyradiomics==3.1.0

-----
- phenopype now requires python 3.9.* and opencv-contrib-python 4.5.2.54
- new function: segmentation.mask_to_contour allows the conversion from a mask to contour
- save_ROI can now export masks as transparent PNGs or with custom background color
- compute_texture_features now can extract features from any range of channels
- thresholding now operates within masks only, if provided, which is MUCH faster when adaptive mode is used

--------------------------------------------------------------------------------------------

-----
bugfix:
- detect_reference was stuck in while loop
- scale can now be drawn using the info collected with create_reference

-----
bugfix:
- missing "dir_names" attributed of project class when loading existing project
- detect_skeleton returns coordinates and correct length in pixels
- improved the QR-code detection algorithm (interactive mode)

-----
- new function: preprocesing.detect_QRcode; will find and read out a QR code that is contained inside an image, with the option to enter code manually if detection fails. visualized with visualization.draw_QRcode
- improved "check_files" method for "project" class; allows to relink files to a new folder
- minor fixes related to console feedback
- bugs in documentation fixed (dead links in tutorials)

-----
- "edit_contours" now has the function to change the target contour directly when using the "Pype": the option "inplace: True" will return the edited contour to be used throughout the current pype run, but not overwrite it in the saved annotations file. for that, a successive "detect_contours" needs to be run
- added more options to select what gets added to the archive when exporting a project with "export_zip"
- added more options for "save_ROI", e.g., to export image crops with a white background
- added more docstrings for functions to autogenerate API