Petab

Latest version: v0.2.9

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0.2.9

* Fixed a bug in `SbmlModel.get_free_parameter_ids_with_values` that led to
potentially wrong initial values in the parameter mapping for parameters that
are targets of `initialAssignment`s (the value from their `value` was taken
instead of the initial assignment)
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/248

0.2.8

* Fixed pandas `FutureWarning` in `petab/visualize/lint.py`
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/242
* Added `petab.Problem.n_{estimated,measurements,priors}`
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/243
* Require pyarrow
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/244

* **Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.7...v0.2.8

0.2.7

* Fixed a bug in `flatten_timepoint_specific_output_overrides`, which
did not handle numeric values correctly

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.6...v0.2.7

0.2.6

* Fixed `flatten_timepoint_specific_output_overrides` not supporting
observableParameter overrides as placeholders in noise formulae
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/235
* Visualization: fixed replicate sorting
by plakrisenko in https://github.com/PEtab-dev/libpetab-python/pull/232
* Doc: Revised visualization examples
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/236

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.5...v0.2.6

0.2.5

* Fix accessing `preequilibrationConditionId` without checking for presence
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/228
* Startpoint sampling for a subset of parameters
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/230
* Treat `observableParameter` overrides as placeholders in noise formulae
by dilpath in https://github.com/PEtab-dev/libpetab-python/pull/231

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.4...v0.2.5

0.2.4

* Made figure sizes for visualization functions customizable via `petab.visualize.plotting.DEFAULT_FIGSIZE`
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/222
* Fixed Handling missing `nominalValue` in `Problem.get_x_nominal`
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/223
* Fixed pandas 2.1.0 `FutureWarnings`
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/226
* Added pre-commit-config, ran black, isort, ...
by dweindl in https://github.com/PEtab-dev/libpetab-python/pull/225

**Full Changelog**: https://github.com/PEtab-dev/libpetab-python/compare/v0.2.3...v0.2.4

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