Changelogs » Omero-web

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Omero-web

5.11.0

---------------------
  
  - Security vulnerability fixes for
  [2021-SV3](https://www.openmicroscopy.org/security/advisories/2021-SV3)

5.11.0.rc1

---------------------------
  
  New features
  
  - Plate layout improvements and configuration. See PR for details ([270](https://github.com/ome/omero-web/pull/270))
  - Configure custom favicon ([311](https://github.com/ome/omero-web/pull/311))
  - OMERO.table Shapes link to OMERO.iviewer ([310](https://github.com/ome/omero-web/pull/310))
  - URL /webgateway/table/FILE_ID/query supports col_names filter ([305](https://github.com/ome/omero-web/pull/305))
  - Improve OMERO.table download usability ([300](https://github.com/ome/omero-web/pull/300))
  - Configure default user and group for search ([297](https://github.com/ome/omero-web/pull/297))
  - Add /shape/ID endpoint to JSON API ([291](https://github.com/ome/omero-web/pull/291))
  
  Bug fixes
  
  - Fix Shift-click to multi-select Wells ([296](https://github.com/ome/omero-web/pull/296))
  - Handle parent not found on POST webclient/api/links ([294](https://github.com/ome/omero-web/pull/294))
  - Display time-stamps in local time ([303](https://github.com/ome/omero-web/pull/303))
  - Public login button uses configured login page ([312](https://github.com/ome/omero-web/pull/312))
  
  Dependencies Updates
  
  - Upgrade Underscore to 1.13.1 ([317](https://github.com/ome/omero-web/pull/317))
  - Upgrade jquery to 3.5.1, jquery.chosen to 1.8.7, jquery.form to 4.3.0, jquery.ui to 1.12.1, jstree 3.3.10 ([180](https://github.com/ome/omero-web/pull/180))

5.9.2

----------------
  
  Bug fixes
  
  - Fix invalid Z/T values in webclient render_image URL ([272](https://github.com/ome/omero-web/pull/272))
  - Active group switch handles invalid group ([273](https://github.com/ome/omero-web/pull/273))
  - Fix delete of user's photo ([274](https://github.com/ome/omero-web/pull/274))
  - Don't log missing script params as Error ([275](https://github.com/ome/omero-web/pull/275))
  - Handle ?show=object-id in invalid group ([276](https://github.com/ome/omero-web/pull/276))
  - OMERO.table query case insensitive ([277](https://github.com/ome/omero-web/pull/277))
  - Fix changes that cause bugs in OMERO.mapr ([282](https://github.com/ome/omero-web/pull/282))
  - Fix User Settings page when in 'All Members' context ([285](https://github.com/ome/omero-web/pull/285))
  
  New features
  - Add metadata support to webgateway table endpoint ([283](https://github.com/ome/omero-web/pull/283))

5.9.1

------------------
  
  Bug fixes
  
  - Fix regression introduced in 5.9.0 ([278](https://github.com/ome/omero-web/pull/278))

5.9.0

------------------
  
  New features
  
  - Webclient UI supports Change Owner ([149](https://github.com/ome/omero-web/pull/149))
  - Filtering by Key-Value pairs supports autocomplete ([250](https://github.com/ome/omero-web/pull/250))
  - Support URLs as output from scripts ([233](https://github.com/ome/omero-web/pull/233))]
  - Improved install info in README ([239](https://github.com/ome/omero-web/pull/239))]
  - Migrate CI to use GitHub actions ([240](https://github.com/ome/omero-web/pull/240))]
  - Improve performance of OMERO.table loading ([243](https://github.com/ome/omero-web/pull/243))
  - OMERO.table ROI column links to ROI in OMERO.iviewer ([264](https://github.com/ome/omero-web/pull/264))
  - Disable placeholder URL popup on tree ([257](https://github.com/ome/omero-web/pull/257))
  - Add an option to set SESSION_COOKIE_PATH ([271]https://github.com/ome/omero-web/pull/271). Thanks to [Andrey Yudin](https://github.com/andreyyudin)
  
  Bug fixes
  
  - Fix Open_with handling of callbacks in right panel ([232](https://github.com/ome/omero-web/pull/232))
  - Fix /webgateway/dataset/ID/children/ URL (Thanks to [Johannes Dewender](https://github.com/JonnyJD)) ([#245](https://github.com/ome/omero-web/pull/245))
  - Remove broken 'Create Shares' dialog ([265](https://github.com/ome/omero-web/pull/265))
  - Fix API ?childCount=true when zero objects found ([249](https://github.com/ome/omero-web/pull/249))
  - Fix partial loading of annotations ([256](https://github.com/ome/omero-web/pull/256))
  - Fix ignored limit in webgateway/table endpoint ([268](https://github.com/ome/omero-web/pull/268))
  
  - Security vulnerability fixes for
  [2021-SV1](https://www.openmicroscopy.org/security/advisories/2021-SV1),
  [2021-SV2](https://www.openmicroscopy.org/security/advisories/2021-SV2)

5.8.1 not secure

----------------------
  
  Bug fixes
  
  - Restore Python 3.5 compatibility ([228](https://github.com/ome/omero-web/pull/228))
  
  Other updates
  
  - Add more details to README for release process ([220](https://github.com/ome/omero-web/pull/220))
  - Run tox in travis instead of Docker ([219](https://github.com/ome/omero-web/pull/219))
  - Run black autoformatter, add pre-commit hook ([218](https://github.com/ome/omero-web/pull/218))

5.8.0 not secure

----------------------
  
  - webclient:
  - Disable large zip file creation for data download ([197](https://github.com/ome/omero-web/pull/197))
  - Fix 'Move to Group' when data owner not in origin group ([212](https://github.com/ome/omero-web/pull/212))
  - History results page supports browse to data ([206](https://github.com/ome/omero-web/pull/206))
  - Fix shortening of Companion file names ([198](https://github.com/ome/omero-web/pull/198))
  - Fix pagination in history page and omero_table ([203](https://github.com/ome/omero-web/pull/203))
  - Link ownership matches child owner ([199](https://github.com/ome/omero-web/pull/199))
  - Improve download of OMERO.table as csv performance ([192](https://github.com/ome/omero-web/pull/192))
  - Fix display of disk usage for very small percentages ([211](https://github.com/ome/omero-web/pull/211))
  
  - API changes:
  - login_required(doConnectionCleanup=False) will close connection unless streaming ([191](https://github.com/ome/omero-web/pull/191))
  - Return 404 for webgateway/imgData/ID if image not found ([209](https://github.com/ome/omero-web/pull/209))
  
  - Other:
  - Handle missing config for 'scripts to ignore' ([195](https://github.com/ome/omero-web/pull/195))
  - Cap pytest-xdist to avoid psutil Travis failures ([201](https://github.com/ome/omero-web/pull/201))

5.7.1 not secure

-----------------
  
  - webgateway
  
  - Always marshal tile metadata on presence of pyramid ([193](https://github.com/ome/omero-web/pull/193))

5.7.0 not secure

-----------------
  
  - webclient:
  - Preserve whitespace and linebreaks in Comments ([150](https://github.com/ome/omero-web/pull/150))
  - Improve filtering Images by numerical Key-Value pairs ([147](https://github.com/ome/omero-web/pull/147))
  - Fix editing of 'Shares' in webclient ([162](https://github.com/ome/omero-web/pull/162))
  - Fix error when user logged-out and public user configured ([154](https://github.com/ome/omero-web/pull/154))
  - No longer ignore the default thumbnail size from the configuration ([165](https://github.com/ome/omero-web/pull/165))
  - Fix moving data in webclient tree in Python 3.5 ([170](https://github.com/ome/omero-web/pull/170))
  - Handle no 'callback' in request.session ([186](https://github.com/ome/omero-web/pull/186))
  
  - API changes:
  - Add ROI support to `paths_to_object` ([159](https://github.com/ome/omero-web/pull/159))
  - Add Shape support to `paths_to_object` ([178](https://github.com/ome/omero-web/pull/178))
  - Add JSON API support for Experimenters and Groups ([148](https://github.com/ome/omero-web/pull/148))
  
  - Other:
  - Fix `render_roi_thumbnail` for unset Z/T index ([157](https://github.com/ome/omero-web/pull/157))
  - `omero-web` now requires `omero-py 5.7.0`
  - Add doc for APPLICATION_SERVER_HOST to settings ([177](https://github.com/ome/omero-web/pull/177))
  - Set sign_tags to True by default in .bumpversion.cfg ([176](https://github.com/ome/omero-web/pull/176))
  - Fix new flake8 warnings ([174](https://github.com/ome/omero-web/pull/174))
  - Add `omero-web-docker` to release process instructions ([156](https://github.com/ome/omero-web/pull/156))

5.6.3 not secure

------------------
  
  - `omero.web.root_application`: allow "/" to be overridden ([123](https://github.com/ome/omero-web/pull/123))
  - Close sessions where user is anonymous but `is_valid_public_url` is false ([151](https://github.com/ome/omero-web/pull/151))

5.6.2 not secure

---------------------
  
  - Fix shape_thumbnail using integer division ([137](https://github.com/ome/omero-web/pull/137))
  - Use chosen plugin for script UI values ([135](https://github.com/ome/omero-web/pull/135))
  - Rating post only ([132](https://github.com/ome/omero-web/pull/132))
  - Fix feedback url encode ([131](https://github.com/ome/omero-web/pull/131))
  - Script GUI file upload ([128](https://github.com/ome/omero-web/pull/128))
  - Script upload ([126](https://github.com/ome/omero-web/pull/126))
  - Fix webadmin search firefox ([125](https://github.com/ome/omero-web/pull/125))
  - Delete check parent links ([124](https://github.com/ome/omero-web/pull/124))
  - Map ann parent ID ([119](https://github.com/ome/omero-web/pull/119))
  - Confine projections to no more than 256MiB of raw data ([115](https://github.com/ome/omero-web/pull/115))
  - Fix color picker hex input box ([114](https://github.com/ome/omero-web/pull/114))
  - Fix and expand "open with" plugin support ([113](https://github.com/ome/omero-web/pull/113))
  - Table download ([3](https://github.com/ome/omero-web/pull/3))

5.6.1 not secure

--------------------
  
  - Quick fix of the show downloads regex ([109](https://github.com/ome/omero-web/pull/109))

5.6.0 not secure

--------------------
  
  - Remove support for Python 2 ([103](https://github.com/ome/omero-web/pull/103))
  - Remove requirement files ([107](https://github.com/ome/omero-web/pull/107))
  - Use BytesIO for default Thumbnail ([104](https://github.com/ome/omero-web/pull/104))
  - omero-web requires OMERODIR ([100](https://github.com/ome/omero-web/pull/100))
  - Ignore OMERO_HOME in settings.py ([98](https://github.com/ome/omero-web/pull/98))
  - Better exception handling of custom settings ([94](https://github.com/ome/omero-web/pull/94))
  - Add support for extra NGINX server configuration ([90](https://github.com/ome/omero-web/pull/90))
  - Fix ROI maks and thumbnails ([92](https://github.com/ome/omero-web/pull/92))
  - Fix script result failures ([87](https://github.com/ome/omero-web/pull/87))
  - Fix download of multiple images in a zip ([76](https://github.com/ome/omero-web/pull/76))
  - Fix race condition while closing tables ([25](https://github.com/ome/omero-web/pull/25))
  - Fix `omero_ext.path` import ([77](https://github.com/ome/omero-web/pull/77))
  - Add `omero.web.nginx_server_extra_config` property ([80](https://github.com/ome/omero-web/pull/80))
  - Use cached config.xml in `omero.webgateway.getClientSettings` ([83](https://github.com/ome/omero-web/pull/83))
  - Fix dialogs for thumbnail figure and split-view figure scripts ([73](https://github.com/ome/omero-web/pull/73))
  - Loosen version checks to support 5.5 with 5.6 ([32](https://github.com/ome/omero-web/pull/32))
  
  API changes
  
  - OMERO.web now fails to start when `<app>.urls` fails to import ([79](https://github.com/ome/omero-web/pull/79))
  - OMERO.web uses Django 1.11, upgraded from Django 1.8.
  - omeroweb.http renamed to omeroweb.httprsp to avoid import name
  clashes with Django http.
  - URLs must be referenced by `name` not path.to.view.method (previously
  some webgateway URLS lacked a name). For example, instead of
  `{% url 'webgateway.views.render_image' image_id theZ theT %}`, use
  `{% url 'webgateway_render_image' image_id theZ theT %}`.

5.5.dev2 not secure

----------------------
  
  - Improve README
  - Add omeroweb.version
  - Move templates to omeroweb/
  - Bump to omero-py 5.5.1.dev1
  - Extract code from ome/openmicroscopy
  - Make minimal changes for a functioning `python setup.py` ([1](https://github.com/ome/omero-web/pull/1))