Mykrobe

Latest version: v0.5.6

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0.3.6

0.3.3

New release uses mccortex as underlying engine with a python API to run `predict`.

New command `genotype` allows typing on a custom gene panel or variant panel.

This release does not include windows and mac apps (only command line version).

0.1.3beta

1. 64-bit Windows Apps for _S. aureus_ and _M. tuberculosis_:
- MykrobePredictor.S.aureus_v0.1.3.exe
- MykrobePredictor.M.tuberculosis_v0.1.3.exe
2. Mac OS X Apps for _S. aureus_ and _M. tuberculosis_
- MykrobePredictor.S.aureus_v0.1.3.dmg
- MykrobePredictor.M.tuberculosis_v0.1.3.dmg
3. Please see previous releases for demonstration data.
- [demo_input_file_for_S.aureus_app.fastq.gz (48Mb)](https://github.com/iqbal-lab/Mykrobe-predictor/releases/download/v0.1.1-beta/demo_input_file_for_S.aureus_app.fastq.gz)
- [demo_input_file_for_M.tuberculosis_app.fastq.gz (72Mb)](https://github.com/iqbal-lab/Mykrobe-predictor/releases/download/v0.1.1-beta/demo_input_file_for_M.tuberculosis_app.fastq.gz)

0.1.1beta

1. 64-bit Windows Apps for _S. aureus_ and _M. tuberculosis_:
- MykrobePredictor_S.aureus_v0.1.1_beta.exe
- MykrobePredictor_M.tuberculosis_v0.1.1_beta.exe
2. Mac OS X Apps for _S. aureus_ and _M. tuberculosis_
- MykrobePredictor_S.aureus_v0.1.1_beta.dmg
- MykrobePredictor_M.tuberculosis_v0.1.1_beta.dmg
3. Demo input files (with real data) for each of _S. aureus_ and _M. tuberculosis_
- demo_input_file_for_S.aureus_app.fastq.gz (48Mb)
- demo_input_file_for_M.tuberculosis_app.fastq.gz (72Mb)

Caveats:
The is a prepublication beta release, and as such there are some cosmetic issues which we will fix in our next release
a) The About button leads to dummy contents
b) The TB app actually says it is version v0.1.2-beta not v0.1.1-beta
The next release will be 0.1.3 for clarity.

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