=======================
Initial major release of 2024, featuring the **extraction of IQMs from DWI data**
for first time in *MRIQC*'s timeline.
.. admonition:: Author list for papers based on *MRIQC* 23.0 series
As described in the `Contributor Guidelines
<https://www.nipreps.org/community/CONTRIBUTING/#recognizing-contributions>`__,
anyone listed as developer or contributor may write and submit manuscripts
about *MRIQC*.
To do so, please move the author(s) name(s) to the front of the following list:
Christopher J. Markiewicz \ :sup:`1`\ ; Zvi Baratz \ :sup:`2`\ ; Eilidh MacNicol \ :sup:`3`\ ; Céline Provins \ :sup:`4`\ ; Teresa Gomez \ :sup:`5`\ ; Dylan Nielson \ :sup:`6`\ ; Jan Varada \ :sup:`7`\ ; Ross W. Blair \ :sup:`1`\ ; Dimitri Papadopoulos Orfanos \ :sup:`8`\ ; William Triplett \ :sup:`9`\ ; Mathias Goncalves \ :sup:`1`\ ; Nikita Beliy \ :sup:`10`\ ; John A. Lee \ :sup:`11`\ ; Patrick Sadil \ :sup:`12`\ ; Ursula A. Tooley \ :sup:`13`\ ; Yibei Chen \ :sup:`14`\ ; James D. Kent \ :sup:`15`\ ; Yaroslav O. Halchenko \ :sup:`16`\ ; Bennet Fauber \ :sup:`17`\ ; Taylor Salo \ :sup:`18`\ ; Michael Krause \ :sup:`19`\ ; Pablo Velasco \ :sup:`20`\ ; Thomas Nichols \ :sup:`21`\ ; Adam Huffman \ :sup:`22`\ ; Elodie Savary \ :sup:`4`\ ; Johannes Achtzehn \ :sup:`23`\ ; Joke Durnez \ :sup:`1`\ ; Satrajit S. Ghosh \ :sup:`24`\ ; Adam C. Raikes \ :sup:`25`\ ; Asier Erramuzpe \ :sup:`26`\ ; Benjamin Kay \ :sup:`27`\ ; Daniel Birman \ :sup:`1`\ ; McKenzie P. Hagen \ :sup:`28`\ ; Michael Dayan \ :sup:`29`\ ; Michael G. Clark \ :sup:`30`\ ; Rafael Garcia-Dias \ :sup:`31`\ ; Adam G. Thomas \ :sup:`32`\ ; Russell A. Poldrack \ :sup:`1`\ ; Ariel Rokem \ :sup:`5`\ ; Oscar Esteban \ :sup:`4`\ .
Affiliations:
1. Department of Psychology, Stanford University, CA, USA
2. Quantivly Inc., Somerville, MA, USA
3. Department of Neuroimaging, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
4. Department of Radiology, Lausanne University Hospital and University of Lausanne, Switzerland
5. The University of Washington eScience Institute, WA, USA
6. Section on Clinical and Computational Psychiatry, National Institute of Mental Health, Bethesda, MD, USA
7. Functional MRI Facility, National Institute of Mental Health, Bethesda, MD, USA
8. NeuroSpin, CEA, Université Paris-Saclay, NeuroSpin, Gif-sur-Yvette, France
9. University of Florida: Gainesville, Florida, US
10. CRC ULiege, Liege, Belgium
11. Quansight, Dublin, Ireland
12. Johns Hopkins Bloomberg School of Public Health, MD, USA
13. Department of Neuroscience, University of Pennsylvania, PA, USA
14. McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, USA
15. Department of Psychology, University of Texas at Austin, TX, USA
16. Psychological and Brain Sciences Department, Dartmouth College, NH, USA
17. University of Michigan, Ann Arbor, USA
18. Department of Psychology, Florida International University, FL, USA
19. Max Planck Institute for Human Development, Berlin, Germany
20. Center for Brain Imaging, New York University, NY, USA
21. Oxford Big Data Institute, University of Oxford, Oxford, GB
22. Department of Physics, Imperial College London, London, UK
23. Charité Berlin, Berlin, Germany
24. McGovern Institute for Brain Research, MIT, MA, USA; and Department of Otolaryngology, Harvard Medical School, MA, USA
25. Center for Innovation in Brain Science, University of Arizona, Tucson, AZ, USA
26. Computational Neuroimaging Lab, BioCruces Health Research Institute
27. Washington University School of Medicine, St.Louis, MO, USA
28. Psychology Department, University of Washington, Seattle, WA, USA
29. International Committee of the Red Cross - ICRC, Geneva, Switzerland
30. National Institutes of Health, USA
31. Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
32. Data Science and Sharing Team, National Institute of Mental Health, Bethesda, MD, USA
CHANGES
-------
* FIX: Bug in *toml* loader crashing with mixed arrays in config (1281)
* FIX: Remove *DataLad* as a node (1278)
* FIX: Calculation of trivial shells (1276)
* FIX: Finalized naming and connection of DWI IQMs (1272)
* FIX: Enable group reports for DWI (1266)
* FIX: Address issues that had broken the group reports (1262)
* FIX: Select filters if modalities are selected (1261)
* FIX: Make sure new logs and config file output are compatible with parallel processes (1259)
* FIX: Skip short BOLD runs that break outlier detection (1120)
* FIX: Revise config save/load and update inputs after dropping (1245)
* FIX: Drift should not be estimated when less than three low-b volumes present (1242, 1243)
* FIX: Handle ``NUMEXPR_MAX_THREADS`` like ``OMP_NUM_THREADS`` (1241)
* FIX: Exclude DWI runs with insufficient orientations or missing bvals (1240)
* FIX: Avert costly ``BIDSLayout.__repr__`` calls when saving config (1239)
* FIX: Duplicate node in anatomical workflow (1234)
* FIX: Typo in ``sorted(..., reverse=True)`` call (1211)
* ENH: Fail for non-formatted code (1274)
* ENH: Annotate nodes with ``n_procs`` to allow safe parallelization (1277)
* ENH: Mechanism to protect config's fields and write out config (1258)
* ENH: Improve documentation and logging of *SynthStrip*'s model (1254)
* ENH: Improve logging of runtime (1253)
* ENH: Expose a command-line option for minimum DWI volumes (1249)
* ENH: Improve error handling and logging (1238)
* ENH: Add *b*-vector angular deviations as IQMs (1233)
* ENH: Move from DTI to DKI with multishell data (1230)
* ENH: Noise floor estimated with PCA (``dwidenoise``) as an IQM (1229)
* ENH: Integrate PIESNO noise mask and sigma estimation (1227)
* ENH: Use MAD for robust estimation of sigma in the CC mask (1228)
* ENH: Add new IQM for DWI → NDC (1226)
* ENH: Add FA-based IQMs (nans percentage and degenerate percentage) (1225)
* ENH: Add computation of spiking voxels mask and percent IQMs (1224)
* ENH: Adds diffusion-related IQMs. (1131)
* ENH: Revise summary stats extraction and include controlled roundings (1219)
* DOC: Add changelog to documentation (1217)
* MAINT: Added ruff to development dependencies (1271)
* MAINT: Removed pre-commit from development dependencies (1269)
* MAINT: Clean up more ``FutureWarning`` issued by *Pandas* (1257)
* MAINT: Prevent pandas-originating deprecation warning (1251)
* MAINT: Move GitHub Actions and config files from *flake8* → *ruff* (1212)
* MAINT: Update contributor affiliation in ``CONTRIBUTORS.md`` (1214)
* STY: Reformat diffusion workflows module (1279)
* STY: Applied ruff formatting (1273)