Changelogs » Mgatk

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Mgatk

0.5.9

- Fix bug in strand assignment in `(b)call` mode

0.5.8

- Fix (hopefully innocuous) bug thanks to bobermayer

0.5.7

- Automatically generate .rds file for use with Signac

0.5.6

- Added `tenx` mode for more efficient processing of large single-cell datasets

0.5.0

- Beta version distributed via PyPi
  - Revamped code used in mtscATAC-seq paper

0.4.0

- Fully separated by strand for counts / qualities
  - UMI-based duplicate read removal available
  - Default to remove PCR duplicates

0.3.9

- Handle common reference genome issue for human genomes (hg19 / rCRS) automatically

0.3.4

- Full support for `bcall` mode

0.3.0

- Per-base / allele quality scores

0.2.5

- Creates .rds for easy i/o into R package
  - Efficient sparse matrices for final text-based output
  - Added additional run modes. 5 total as of now (call, one, gather, support, check)

0.1.0

- Alpha version uploaded to PyPi

0.0.1

- Added NEWS