- Python 3.8 - `min_depth` defaults to 1 in both CLI and Python API (CLI default was 2) - Removes `<unknown description>` from generated fasta headers
0.4.3
- Fixes crash for reference sequences <100bp - Counts SAM 1.4 CIGAR X records - Changes to stdout report format
0.4.2a
- Works with Minimap2 BAMs - Tested against bacterial alignment (performance is poor; be warned)
0.4.1
Fixes SAM parsing regression in 0.4.0 (thanks to mdshw5)
0.4.0
- Support for BAMs with more than one reference chromosome - Generates a consensus sequence for each reference contig with one or more primary alignments
0.3.0
- Basic documentation and JOSS paper - Tidies up tabular output of weights()