Iridauploader

Latest version: v0.9.2

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0.9.2

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Bug Fixes:
* [CRITICAL] Fixed use of deprecated urllib3 method to `allowed_methods`

Developer Changes:
* Dropped support for Python v3.6 as urllib3 no longer supports it

0.9.1

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Changes:
* Changed api method `get_sample_by_name` to use new irida endpoint.
* Minimum IRIDA version is now `23.01`

0.9.0

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Changes:
* Api checks IRIDA version compatibility when initializing a session, throws exception if not compatible.
* Improved GUI error reporting with details of failure to connect on configuration screen.
* Improved GUI error popup when connection error occurs when starting upload.
* Added 2 new config arguments to specify number of retries and backoff time for http/https requests
* http_max_retries
* http_backoff_factor
* Uploader no longer has slowdown when uploading to projects with >100,000 samples
* api methods `get_sample_details` has been replaced by two new methods
* `get_sample_by_id(self, sample_id)`
* `get_sample_by_name(self, project_id, sample_name)`
* core code has been switched over to these new methods for performance

Developer Changes:
* [Developer] Fixed minor bugs with object models not handling properties correctly.
* [Developer] Added command `make coverage` to all tests and collect coverage, exporting results as html
* [Developer] Added automated coverage report generation for PR reviews.
* [Developer] Changed `master` to `main` everywhere, including references to irida branches.
* [Developer] Added python 3.10 and 3.11 to unit test matrix
* [Developer] Added get_irida_version(self) to api, returns a string with the irida version

Bug Fixes:
* Fixed config timeout value not being set correctly sometimes.
* Fixed config timeout value division by string issue.
* Fix GUI crash on python >3.9(?) when progress bar is set a float value instead of int
* Fixed edge case where a config default of `0` or `False` would return an error instead of the default.

0.8.3

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Changes:
* [GUI] Partial uploads now display the reason (error) that caused the run to stop.

Bug Fixes:
* Fixed Error's setting run to ERROR when run has uploaded samples. Now sets these runs to PARTIAL to allow continuing from where the Error occurred.

0.8.2

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Bug Fixes:
* config file now evaluates any capitalization of True/False and displays errors to the user if unable to parse.
* Fixed command line help text inconsistency
* Catch mixed paired end and single end files in a sequencing run at the validation step and show user which samples are incorrect.

Developer Changes:
* Integration Tests now launch IRIDA with Gradle

0.8.1

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Bug Fixes:
* Fixed duplicate `/` in generated url's

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