- Stop excluding `README.md` from the build, because setup.py depends on this file.
0.0.8
- Replace `scipy.cluster.vq.kmeans2` with the faster function `sklearn.cluster.KMeans`. Thanks to johnarevalo for providing details about the running time with both functions in PR 20.
0.0.6
- Replace `scipy.cluster.vq.kmeans` with `scipy.cluster.vq.kmeans2` to address issue 10 where we learned that kmeans does not always return k centroids, but kmeans2 does return k centroids. Thanks to onionpork and DennisPost10 for reporting this.
0.0.5
- Expose `max_iter_harmony` as a new top-level argument, in addition to the previously exposed `max_iter_kmeans`. This more closely resembles the original interface in the harmony R package. Thanks to pinin4fjords for pull request 8
0.0.4
- Fix a bug in the LISI code that sometimes causes computation to break. Thanks to tariqdaouda for reporting it in issue 1
- Fix a bug that prevents controlling the number of iterations. Thanks to liboxun for reporting it in issue 3
- Fix a bug causing slightly different results than expected. Thanks to bli25broad for pull request 2
- Add support for multiple categorical batch variables.
0.0.3
- Speed up the Harmony algorithm. It should now be as fast as the R package.