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* Fix bug in h3 trim * Add tests for trim * Add sequence samples from all h1 and h3 clades * Add aadiff subcommand with absolute HA indexing against subtype refs
Fix bug in --print-groups
Changes to represent: * Add --print-groups option * Add progress bar * Only consider dates if --max-day-sep argument is given (no default) * If --max-day-sep is given, keep the latest entry from each group, otherwise keep first alphabetically * Do not parse states unless --same-state is given
* add group by USA state
* initial release