Deepbiome

Latest version: v1.0.1

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1.0.1

[DeepBiome](https://young-won.github.io/deepbiome): a phylogenetic tree regularized deep neural network for microbiome data analysis

`DeepBiome` uncovers the microbiome-phenotype association network and visualizes its path to disease. `DeepBiome` takes microbiome abundance data as input and uses the phylogenetic taxonomy to guide the decision of the optimal number of layers and neurons in the deep learning architecture. A phylogeny regularized weight decay technique regularize the `DeepBiome` model to avoid overfitting.

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