Debarcer

Latest version: v2.1.4

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2.1.0

This is the latest release of debarcer 2. It includes bug fixes and new features.
See the wiki for information on how to run debarcer.

2.0.3alpha

Fixed installation error

2.0.2alpha

Fixed one-allele mismatch error in CONS files
Updated consensus plot function
Corrected reference sequence Debarcer output
Added header, ref_bases, removed vcf data in cons files
Added condition to handle SPACER=FALSE case
Fixed error executing args.func(args) in debarcer.py

2.0.1alpha

* Added framework for plotting with ggplot (/utils/generate_plots.py)
* Added log output with timestamps to debarcer.py
* Improved config handling
* Improved performance of `UMIGroup.getClosest(self, pos, pos_threshold)`
* Removed unnecessary VCF output (i.e. empty VCF files)

2.0.0alpha

This is the first alpha release of Debarcer 2, a complete rewrite of Debarcer in Python. See the wiki for information on how to use this software.

0.3.1

This release freezes developments as of June 1, 2016. Here's a brief overview of changes since the last release:
- Amplicons with nearly identical start coordinates are merged to increase data usage.
- Added rudimentary downsampling plots.
- Updated barplots to show positions.
- Cleaned up the package directory structure.

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