Changelogs » Chanjo-report

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Chanjo-report

3.0.2

Added
  - option to pass link to gene view

3.0.1

Fixed
  - minor issues in genes view

3.0.0

Adds
  - Support for new transcript schema in chanjo v3.4.0
  
  Removed
  - Support for default exon focused schema in previous version of chanjo

2.6.1

Fixed
  - generate links with joined gene ids

2.6.0

Added
  - Add overview of transcripts (for list of genes)
  
  Changed
  - Show 404 if gene not found for gene overview

2.5.1

Changed
  - Order completeness levels in plot and update colors
  - Use CDNJS for highcharts to support also HTTPS

2.5.0

Added
  - A new gene overview for all or a subset of samples
  - Include chanjo repo in Vagrant environment

2.4.1

Fixed
  - roll back after `OperationalError`

2.4.0

Added
  - handle post/get requests for the coverage report (URL limits)
  - new "index" blueprint which displays list of samples and genes
  
  Removed
  - link to the "index" page from the report (security)
  
  Changed
  - use a customized version of the HTML form for the PDF link in the navbar
  - avoid searching for group id if sample ids are submitted in query
  - use "select" element for picking completeness level
  
  Fixed
  - removes the "submit" label from the customizations form
  - look up "show_genes" from correct "args/form" dict

2.3.2 not secure

Fixed
  - handle white-space in gene ids

2.3.1 not secure

Changed
  - updates how to call diagnostic yield method to explicitly send in exon ids

2.3.0 not secure

Adds
  - add ability to change sample/group id in report through query args

2.2.1 not secure

Changes
  - improved phrasing of explanations and other translations

2.2.0 not secure

Added
  - ability to determine lang by setting query arg in URL
  - add uploaded date to report per sample
  
  Changed
  - rename "gender" as "sex"
  - clarify explanations, rename "diagnostic yield"
  
  Fixed
  - update to Python 3.5 and fix travis test setup
  - stay on "groups" route for PDF report

2.1.0 not secure

Added
  - Customization options for report
  - Link to PDF version of report
  
  Changed
  - Updated chanjo requirement

2.0.1 not secure

Fixed
  - Include missing template files in dist
  - Include more translations

2.0.0 not secure

Changed
  - Adds support for Chanjo 3
  - Layout of report is more condensed
  - Updated APIs across the board

1.0.1 not secure

Fixed
  - Fix bug in diagnostic yield method

1.0.0 not secure

Fixed
  - Fix issue in diagnostic yield for small gene panels

1.0.0rc1

Fixed
  - Changes label for gender prediction

0.0.13 not secure

Fixed
  - Breaking bug in CLI when not setting gene panel

0.0.12 not secure

Added
  - Add explanation of gender prediction in report
  
  Changed
  - Handle extensions of intervals (splice sites) transparently in report
  - Update text in report (eng + swe)
  
  Fixed
  - Avoid error when not setting a gene panel + name in CLI

0.0.11 not secure

Changed
  - Enable setting name of gene panel (PANEL_NAME) from command line

0.0.10 not secure

Fixed
  - Remove duplicate call to ``configure_extensions``

0.0.9 not secure

Changed
  - Keep scoped session chanjo api inside ``current_app`` object

0.0.8 not secure

Changed
  - Change default log folder to ``/tmp/logs``
  - Rename info log to more specific ``chanjo-report.info.log``

0.0.7 not secure

Changed
  - Add a splash of color to HTML/PDF report (CSS only)
  - Change name from ``HISTORY.md`` to ``CHANGELOG.md``

0.0.6 not secure

Fixed
  - Incorrect template pointers in "package_data"

0.0.5 not secure

Fixed
  - Namespace templates for "report" Blueprint under "report"