PyUp Safety actively tracks 266,777 Python packages for vulnerabilities and notifies you when to upgrade.
Main updates * New combined cell detection and registration viewer (see [Visualisation](https://docs.cellfinder.info/user-guide/visualisation)) * There is a new and improved GUI for manually segmenting linear tracks and volumes in standard space (see [Manually segment in standard space](https://docs.cellfinder.info/neuro/standalone-tools/manual-segmentation)). Added * Registration can now deal with data in a non-standard orientation (see [Image orientation](https://docs.cellfinder.info/amap/getting-started/image-orientation)) * Detected cell positions can now be manually curated and saved (see [Visualisation](https://docs.cellfinder.info/user-guide/visualisation)) Fixed * Bug causing data to occasionally be loaded in the incorrect order for registration is fixed Removed * `amap_vis` has been replaced with `cellfinder_view` * `cellfinder_view_cells` has been replaced with `cellfinder view`
Main updates * Windows bug fix thanks to [EmanPaoli](https://github.com/EmanPaoli) * Prebuilt wheels now released for Linux, Windows and macOS (untested) Developers * Update dependencies & refactor usage of amap api
Added Training can now be saved every N epochs using `--checkpoint-interval` Fixed * Bug fixed in `cellfinder_xml_crop` * Pandas dependencies updated thanks to [amedyukhina](https://github.com/amedyukhina)
Fix memory leak in training
Main updates * New all python training data generation interface, `cellfinder_curate`. Details [here](https://sainsburywellcomecentre.github.io/cellfinder/main/user_guide/training.html) Developers * Heatmap and converting cells to brainrender format moved to [neuro](https://github.com/SainsburyWellcomeCentre/neuro) * Lots of utility functions moved to [imlib](https://github.com/adamltyson/imlib) * Automatic deployment with Travis