Cellfinder

What's Changed
* Cellfinder test fix by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/400

**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.1.2...v1.1.3

What's Changed
* Pin minimum brainglobe dependency versions by K-Meech in https://github.com/brainglobe/cellfinder/pull/392
* basic fix avoiding writing to package files by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/394

New Contributors
* K-Meech made their first contribution in https://github.com/brainglobe/cellfinder/pull/392

**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.1.1...v1.1.2

Fixes bug causing very long cell detection times
This bug affects many users, please update ASAP.

What's Changed
* Remove outdated info in the napari plugin __init__ by adamltyson in https://github.com/brainglobe/cellfinder/pull/358
* Raise more informative error message when data with a large z-spacing is used by adamltyson in https://github.com/brainglobe/cellfinder/pull/359
* Update GitHub actions status badge by adamltyson in https://github.com/brainglobe/cellfinder/pull/360
* Adds vertical scroll bar to the training widget by adamltyson in https://github.com/brainglobe/cellfinder/pull/357
* Fix pyproject links by adamltyson in https://github.com/brainglobe/cellfinder/pull/361
* Delete old training data saves and warn user by adamltyson in https://github.com/brainglobe/cellfinder/pull/365
* Remove `pytest-lazy-fixture` due to incompatibility with `pytest v8.0.0` by willGraham01 in https://github.com/brainglobe/cellfinder/pull/369
* Update test_and_deploy.yml by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/370
* Add curation keyboard shortcuts by adamltyson in https://github.com/brainglobe/cellfinder/pull/366
* [pre-commit.ci] pre-commit autoupdate by pre-commit-ci in https://github.com/brainglobe/cellfinder/pull/371
* Create CITATION.cff by willGraham01 in https://github.com/brainglobe/cellfinder/pull/367
* Switch order of arguments passed to prep_model_weights in train_yml.py by IgorTatarnikov in https://github.com/brainglobe/cellfinder/pull/384
* add a test for connect_four by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/385
* consistently use uint32 in candidate detection by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/388

New Contributors
* IgorTatarnikov made their first contribution in https://github.com/brainglobe/cellfinder/pull/384

**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.1.0...v1.1.1

Remove Duplicate Function

Removes a duplicated function from the package (https://github.com/brainglobe/cellfinder/issues/272) and standardises the corresponding calls across other functions within the package.

Various developer-related updates are also going in with this PR, which do not affect anything in the package.
- Reinstating the `brainmapper` CI check, but as an optional check to indicate potential breakages
- Additional tests added
- Pre-commit config modified slightly.

What's Changed
* Reinstate brainmapper ci check by willGraham01 in https://github.com/brainglobe/cellfinder/pull/347
* Update github link in widget by adamltyson in https://github.com/brainglobe/cellfinder/pull/350
* Update tooling config by adamltyson in https://github.com/brainglobe/cellfinder/pull/351
* Update tests by adamltyson in https://github.com/brainglobe/cellfinder/pull/348
* Prep merge by adamltyson in https://github.com/brainglobe/cellfinder/pull/349


**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v1.0.0...v1.1.0

Users may wish to uninstall `brainreg-napari` and `brainreg-segment` before updating. For details, see [our blog post](https://brainglobe.info/blog/version1/brainreg_update_live.html).

What's Changed
* Update to brainreg v1 compliance by willGraham01 in https://github.com/brainglobe/cellfinder/pull/255


**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v0.7.1...v0.8.0

`cellfinder` has migrated!

`v0.8.1` marks the end of the `cellfinder` package's current lifecycle, as it prepares for it's [new role in BrainGlobe version 1](https://brainglobe.info/blog/version1/cellfinder_migration_live.html).

Users are recommended to [head over to `brainglobe-workflows`](https://github.com/brainglobe/brainglobe-workflows) and install that package if they want to continue using the `cellfinder` command-line interface.

What's Changed
* Replace `pandas.df.append` with `safe_concat` by alessandrofelder in https://github.com/brainglobe/cellfinder/pull/259
* Prepare for migration by willGraham01 in https://github.com/brainglobe/cellfinder/pull/261

New Contributors
* alessandrofelder made their first contribution in https://github.com/brainglobe/cellfinder/pull/259

**Full Changelog**: https://github.com/brainglobe/cellfinder/compare/v0.8.0...v0.8.1