Changelogs » Cellfinder

PyUp Safety actively tracks 266,777 Python packages for vulnerabilities and notifies you when to upgrade.

Cellfinder

0.3.14

Main updates
  
  * New combined cell detection and registration viewer (see [Visualisation](https://docs.cellfinder.info/user-guide/visualisation))
  * There is a new and improved GUI for manually segmenting linear tracks and volumes in standard space (see [Manually segment in standard space](https://docs.cellfinder.info/neuro/standalone-tools/manual-segmentation)).
  
  Added
  
  * Registration can now deal with data in a non-standard orientation (see [Image orientation](https://docs.cellfinder.info/amap/getting-started/image-orientation))
  * Detected cell positions can now be manually curated and saved (see [Visualisation](https://docs.cellfinder.info/user-guide/visualisation))
  
  Fixed
  
  * Bug causing data to occasionally be loaded in the incorrect order for registration is fixed
  
  Removed
  
  * `amap_vis` has been replaced with `cellfinder_view`
  * `cellfinder_view_cells` has been replaced with `cellfinder view`

0.3.12b

Main updates
  * Windows bug fix thanks to [EmanPaoli](https://github.com/EmanPaoli)
  * Prebuilt wheels now released for Linux, Windows and macOS (untested)
  
  Developers
  * Update dependencies & refactor usage of amap api

0.3.11

Further refactoring

0.3.10

Minor refactoring

0.3.9

Added
  Training can now be saved every N epochs using `--checkpoint-interval`
  Fixed
  * Bug fixed in `cellfinder_xml_crop`
  * Pandas dependencies updated thanks to [amedyukhina](https://github.com/amedyukhina)

0.3.9rc1


        

0.3.9rc0


        

0.3.8

Fix memory leak in training

0.3.8rc0


        

0.3.7


        

0.3.6rc0


        

0.3.5

Main updates
  * New all python training data generation interface, `cellfinder_curate`. Details [here](https://sainsburywellcomecentre.github.io/cellfinder/main/user_guide/training.html)
  
  
  Developers
  * Heatmap and converting cells to brainrender format moved to [neuro](https://github.com/SainsburyWellcomeCentre/neuro)
  * Lots of utility functions moved to [imlib](https://github.com/adamltyson/imlib)
  * Automatic deployment with Travis

0.3.4


        

0.3.4rc3