Changelogs » Cathpy

Cathpy

0.2.2

*Release date: 11/10/2019*

* improved amino acid checks
* fixed bug with warning message when parsing stockholm alignments from string

0.2.1

*Release date: 21/06/2019*

* changed new_from_(file|string|io) to from_(file|string|io)
* cathpy.release container classes retrieve via primary key (eg. domainlist[0] === domainlist['1cukA01'])
* added codecov

0.1.14

*Release date: 20/06/2019*

* added `cathpy.release` to read/write/query CATH release files

0.1.13

*Release date: 12/06/2019*

* allow for null results from funfhmmer scan

0.1.12

*Release date: 30/05/2019*

* results from `align.get_meta_summary` now returns as AlignMetaSummary

0.1.11

*Release date: 30/05/2019*

* generate summary of alignment meta data `align.get_meta_summary`

0.1.10

*Release date: 21/05/2019*

* stockholm parser can now process meta data in Pfam alignments
* use `uid` rather than `id` in `cathpy.align`

0.1.9

*Release date: 16/05/2019*

* minor improvements to Sequence and Alignment
* align.add_sequence() now accepts `offset`
* len(Sequence) works as expected
* Segment start/stop can be accessed with seg[0], seg[1]

0.1.8

*Release date: 09/05/2019*

* align:
* handle `.gz` align files
* use start/stop (in params) rather than start/end

0.1.7

*Release date: 02/05/2019*

0.1.6

*Release date: 02/05/2019*

* funfhmmer:
* allow custom queues
* incorporate resolved scans

* Make sure matrix data is included in package

0.1.5

*Release date: 24/04/2019*

* Added required matrix data for `scorecons` binary

0.1.4

*Release date: 16/04/2019*

* Added binaries to allow scripts to work on Mac (darwin) and Linux

0.1.1

*Release date: 15/04/2019*

* Improved how version numbers are stored

0.1.0

*Release date: 15/04/2019*

General

* Improved handling of STOCKHOLM parser (f52b9a1, 4fc0069)
* Added Sphinx docs
* Refactor `cathpy.utils`:
* `CathVersion` to `cathpy.version`
* simple classes to `cathpy.models`
* util functions to `cathpy.tests`

0.0.1

General

* first release