Capsid

Web Application

**FEATURES**

* Tab for Project level statistics to the genome page
* Total number of samples displayed in the project list view
* Cancel Edit link to return to main view without saving
* More descriptive page titles
* Pagination added to tables
* Default Mapped tab changed to Alignment

**FIXES**

* Remove broken Add Sample button on Sample list page
* Broken Edit Alignment button
* Genomes features not displaying even when features existed
* Formatting for Add User popup

Web Application

**FIXES**

* Mapped alignemnt positions line up properly with genome positions
* Open new tab when clicking on read in JBrowse
* Adds link to show all samples from genome details page
* Edit User button properly labelled and working
* Added cancer type to sample page
* Users and UserRoles save properly

Pipeline

**FIXES**

* Subtraction filters unmapped reads before building mapped alignments

Web Application

**FIXES**

* Show reads that map to both reference sets in red

Web Application

**FIXES**

* Updated README.md
* Corrected JavaScript issues which broke adding users

Web Application

**FIXES**

* Corrected Config Access issues

Web Application

**FEATURES**

* Config file location can be specified through Java System Property

**FIXES**

* Deploying under Tomcat or Jetty works again
* OpenJDK compatible (no longer requires Oracle VM)
* 404 issue for reads that didn't map to any gene