- MethylDackel Support - Option to output alignments to stdout
1.5.0
- Improved thread handling - Experimental bisulfite aware SNP caller
1.4.8
- Implemented alignment stats streaming - Fixed bug that stopped alignments with low observed mappability - Updated documentation with publication information - Cleaned masked alignment / index unit tests - Fixed bug ending alignment when the reference template end greater than reference boundary
1.4.5
- fixed methylation calling bug for sites covered by greater than 8000 reads