Bioregistry

Latest version: v0.11.1

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0.11.0

What's Changed
* Add PubMed and PMC contact and update PMC information by cthoyt in https://github.com/biopragmatics/bioregistry/pull/968
* Externalize prefix map export implementation by cthoyt in https://github.com/biopragmatics/bioregistry/pull/972
* Refactor converter generation code by cthoyt in https://github.com/biopragmatics/bioregistry/pull/974
* Reimplement CURIE prefix reconciliation for prescriptive contexts by cthoyt in https://github.com/biopragmatics/bioregistry/pull/975
* Implement rewiring by cthoyt in https://github.com/biopragmatics/bioregistry/pull/977
* Add NIST CODATA by cthoyt in https://github.com/biopragmatics/bioregistry/pull/980
* Add DOAP to semantic web collection, remove "integration status" label, and remove bulk prefix form generation by cthoyt in https://github.com/biopragmatics/bioregistry/pull/981
* Add prefix: m4i by github-actions in https://github.com/biopragmatics/bioregistry/pull/971
* Update NMDC pattern and URI format by cthoyt in https://github.com/biopragmatics/bioregistry/pull/982
* Update OBO in OWL by cthoyt in https://github.com/biopragmatics/bioregistry/pull/973
* Add NCBIGene synonym by cthoyt in https://github.com/biopragmatics/bioregistry/pull/988
* Remove unused hierarchical annotation and add additional mismatches by cthoyt in https://github.com/biopragmatics/bioregistry/pull/994
* Add field for annotating unresolvable ontologies, update OLS processing, and better annotate HPATH by cthoyt in https://github.com/biopragmatics/bioregistry/pull/993
* Add prefix: mvx by github-actions in https://github.com/biopragmatics/bioregistry/pull/987
* Add prefix: devtox by cthoyt in https://github.com/biopragmatics/bioregistry/pull/995
* Update lab and funding text by cthoyt in https://github.com/biopragmatics/bioregistry/pull/996
* Add prefix: oecd.template by github-actions in https://github.com/biopragmatics/bioregistry/pull/998
* Improve new prefix form by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1000
* Add cellguide providers for CL and UBERON by github-actions in https://github.com/biopragmatics/bioregistry/pull/1002
* New prefix: openWEMI by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1004
* Add Bioregistry canonical prefixes as synonyms in OBO export by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1005
* New prefixes: cc and rdfa by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1006
* Update shex by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1007
* Add prefix: metacyc.pathway by github-actions in https://github.com/biopragmatics/bioregistry/pull/1013
* Update `glygen` by jeet-vora in https://github.com/biopragmatics/bioregistry/pull/1015
* Add Dewey Decimal Classification, AFTOL Categories, and improve BARTOC import by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1017
* Improve FAIRsharing import by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1018
* Align with Linked Open Vocabularies (LOV) by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1019
* Add Zazuko Prefix Registry by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1020
* Align with TogoID by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1021
* Update prefix: m4i by Zack-83 in https://github.com/biopragmatics/bioregistry/pull/1022
* Add VectorBase contact by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1023
* Improve ORCID validation by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1024
* Align Integbio by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1025
* Align with Pathguide by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1026
* Add some synonyms for prefixes by bgyori in https://github.com/biopragmatics/bioregistry/pull/1027
* Updates to the WikiPathways record by egonw in https://github.com/biopragmatics/bioregistry/pull/1028
* Added the ERM Identifier Database as provider by egonw in https://github.com/biopragmatics/bioregistry/pull/1029
* Hide RDFLib import in togoid by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1030
* Fix Integbio downloader by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1031
* Fix new prefix action code, add missing publications key by bgyori in https://github.com/biopragmatics/bioregistry/pull/1033
* Add SID as synonym for pubchem.substance by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1036
* Improve redirection by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1037
* Add prefix: hgvs by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1035
* Fix UniProt alignment by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1038
* Update mass spec records by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1040
* Mark three Bgee resources as deprecated by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1041
* Add WB uppercase prefix to bioregistry by matentzn in https://github.com/biopragmatics/bioregistry/pull/1042
* Add prefix: mavedb by github-actions in https://github.com/biopragmatics/bioregistry/pull/1046
* Add missing pandas dependency for alignment by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1047
* Update IDO pattern by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1049
* Add NCBITaxon contact by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1055
* New prefix: biocompute by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1053
* Add prefix: OncoMX by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1054
* Proactively update Prefix.cc by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1056
* Add prefix: osti by github-actions in https://github.com/biopragmatics/bioregistry/pull/1051
* Fix Pydantic models for health report by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1057
* Add license for ORDO and update OBO Foundry patterns/examples by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1059
* Prepare training materials for monday by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1060
* Add new providers and logo to MeSH by rombaum in https://github.com/biopragmatics/bioregistry/pull/1066
* Update contributors page by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1069
* Add stylization of MeSH prefix to OBO Foundry Community Context by kevinschaper in https://github.com/biopragmatics/bioregistry/pull/1062
* Remove incorrect mapping for ICDO by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1071
* Update URL for Cellosaurus OBO file by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1072
* Add contact and publications for GARD by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1073
* Add UMLS resource licenses by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1068
* Add URI parsing endpoint by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1070
* Update reference handling by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1076
* License curations for gene resources by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1078
* Add documentation about PURLs by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1080
* More curations by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1081
* Fix broken links by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1082
* Add nztcs record with wikidata mapping by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1083
* Don't display Twitter handles by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1088
* Improve Pydantic handling of private attribute by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1089
* Add new provider to Reactome record for Pathway Viewer by github-actions in https://github.com/biopragmatics/bioregistry/pull/1086
* Add lowercase preferred prefix for semweb resources, update rdf example by bgyori in https://github.com/biopragmatics/bioregistry/pull/1091
* Update GO providers and enable overriding Identifiers.org by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1093
* Improve provider section of resource page on web app by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1094
* Improve contribution docs by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1097
* Reorganize repository structure by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1103
* Change update schedule to weekly by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1101
* Add new contact people by cthoyt in https://github.com/biopragmatics/bioregistry/pull/1102

New Contributors
* jeet-vora made their first contribution in https://github.com/biopragmatics/bioregistry/pull/1015
* Zack-83 made their first contribution in https://github.com/biopragmatics/bioregistry/pull/1022
* rombaum made their first contribution in https://github.com/biopragmatics/bioregistry/pull/1066
* kevinschaper made their first contribution in https://github.com/biopragmatics/bioregistry/pull/1062

**Full Changelog**: https://github.com/biopragmatics/bioregistry/compare/v0.10.65...v0.11.0

0.10.65

**Full Changelog**: https://github.com/biopragmatics/bioregistry/compare/v0.10.64...v0.10.65

0.10.64

**Full Changelog**: https://github.com/biopragmatics/bioregistry/compare/v0.10.63...v0.10.64

0.10.63

**Full Changelog**: https://github.com/biopragmatics/bioregistry/compare/v0.10.62...v0.10.63

0.9.64

Commits
- fad8d63: Bump version: 0.9.63 → 0.9.64-dev (GitHub Action)
- e82a658: Get mappings between external registries (902) (Charles Tapley Hoyt) [902](https://github.com/biopragmatics/bioregistry/pull/902)
- 2dec881: Bump version: 0.9.64-dev → 0.9.64 (Charles Tapley Hoyt)

0.9.62

> **Warning**
> This is the last version of the Bioregistry that will support Pydantic 1.X.Y. Bioregistry v0.10.Y will require Pydantic 2.0

Commits
- e87512b: Bump version: 0.9.61 → 0.9.62-dev (GitHub Action)
- 451c878: Pin pydantic below 2.0 (Charles Tapley Hoyt)
- a48d8ad: Bump version: 0.9.62-dev → 0.9.62 (Charles Tapley Hoyt)

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