Bidscoin

This is a hotfix release for v4.3.1, which was just released but was giving undesired results after changing the data type in the bidseditor. Apart from the fix in this release (see Github issue https://github.com/Donders-Institute/bidscoin/issues/229 for full explanation) nothing else has changed

IMPORTANT UPDATE:

This release contains a bug that can yield undesired output, please upgrade to **4.3.2**

--------------- original notes ------------------
Here is a minor and safe BIDScoin upgrade, with fixes and two new features:
- Update B0FieldIdentifier/Source when having multiple fieldmap runs (Github issue [198](https://github.com/Donders-Institute/bidscoin/issues/198)). For more info see [here](https://bidscoin.readthedocs.io/en/latest/bidsmap.html#fieldmaps-b0fieldidentifier-b0fieldsource)
- Slicereport support for all nibabel file-formats

Enjoy!

With this major release, BIDScoin became more robust and solid than ever before, while gaining several new features that add to its flexibility and user-friendliness. Amongst others, the major new highlights are:

- Support for the recently released **BIDS v1.9.0** specifications
- A `--cluster` option for running bidscoiner **in parallel** on a (DRMAA enabled) HPC
- A new `bidsmap_bids2bids` template bidsmap for nibabel2bids to **edit existing BIDS datasets**
- New special dynamic values, such as `<<session>>`, `<<dir>>` and `<<PhaseEncodingDirection>>`
- Parsing of DICOM tags from the Siemens CSA headers
- A `bidscoiner.tsv` log-file for easier tracking of file conversions / data provenance
- Integrated **fslmaths preprocessing** on slicereport input images
- BIDScoin duecredit reports

For more details see the [changelog](https://bidscoin.readthedocs.io/en/stable/CHANGELOG.html)

A bugfix release with some additions

Added
- A bidsmap schema file
- Enhanced DICOM (XA-30) support for physiological data (backported from the CMRR repository)
- Slurm support for the `skullstrip` and `slicereport` bidsapps

Changed
- Use a true list (instead of a semi-colon separated string) for the bidsmap's `bidsignore` field
- The telemetry url

Greetings, sentient beings of the digital cosmos! It is with great pleasure that we announce the release of BIDScoin version **4.2.0**. This release, like the Ultimate Answer itself, brings a sense of fulfillment and excitement to the table. So grab your towel, don your favorite bathrobe, and let's dive headfirst into the infinite improbability of BIDScoin!

Added
- Users can now more easily view and edit their default BIDScoin settings
- In our quest for infinite knowledge and improved user experiences, BIDScoin has implemented a service that, in the style of a friendly, paranoid android, may track user behavior into the Total Perspective Vortex (github issue 200). Rest assured, I've consulted with Zaphod Beeblebrox to ensure that your personal data is never put to misuse. In the event you feel uneasy about our user tracking, you can adjust your privacy settings in the "Don't Panic" section in the new BIDScoin settings (see `bidscoin --show`).
- The option to pip-install dcm2niix as `extras`

Changed
- The template bidsmaps are now stored in `[home]/.bidscoin/[version]/templates`, i.e. in the user settings folder

Fixed
- Numerous infinitely small bugfixes and improbable tweaks

Go and explore BIDScoin **4.2.0** with the same sense of wonder and absurdity that you approach the rest of the universe :slightly_smiling_face:

Here's some good and some bad news. The bad news is there were a few glitches in BIDScoin 4.1.0, but the good news is that they are fixed in the new BIDScoin 4.1.1 release :slightly_smiling_face:

**The fixes in this new release are:**

* Bugfixes to support (XA30) enhanced DICOM
* Bugfix to catch multi-echo series with dynamic runindex `<<>>`
* Prioritize fmap data discovery
* Remove invalid bval/bvec files
* Reduce filesize warnings