Changelogs » Axondeepseg

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Axondeepseg

3.1

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  **Changed:**
  
  - Resolved bug that caused TEM data to not segment images well (at all).

3.0

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  **Changed:**
  
  - Refractored data augmentation to use `Albumentation` library.
  - Cleaned jupyter notebooks and reduced from 13 notebooks to 5.
  - Switched to `Dice Loss` from `Categorical Cross Entropy` as loss function.
  - Updated SEM and TEM models for better performance.
  - Shifted AxonDeepSeg from TensorFlow to Keras framework.
  - Upgraded CUDA to 10.0 and tensorflow to 1.13.1.
  - Resolve image rescale warnings
  - Handle exception for images smaller than minimum patch size after resizing
  - Revert tensorflow requirekment to 1.3.0 and remove tifffile requirement
  - Remove `matplotlib.pyplot` from source code and refactor to full OO plotting
  - Standardize path management to `pathlib` library
  - Shifted AxonDeepSeg from TensorFlow to Keras framework.
  - Upgraded CUDA to 10.0 and tensorflow to 1.13.1.
  – Add FSLeyes plugin

2.1

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  **Changed:**
  
  - Fixed bug that would crash when user inputed consent for Sentry tracking

2.0

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  **Changed:**
  
  - Upgraded ADS for Python 3.6-compatibility (no longer supporting Python 2.7)
  - Minor changes to make ADS Windows-compatibile
  - Removed plot hold commands (deprecated)

1.1

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  **Changed:**
  
  - Minor Mac OSX-related bug fix
  - Changed installation requirements to exact release versions

1.0

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  Versions 1.x will remain Python 2.7-compatible

0.6

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0.5

**Added:**
  
  - Comprehensive testing suite
  - Bug tracking (Sentry)
  - Blue-red visualisation function for segmented masks
  
  **Changed:**
  
  - Dataset building and training notebook
  - Minor documentation improvements
  - Minor bug fixes

0.4.1

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  **Added:**
  
  - GIMP procedure for ground truth labelling or segmentation correction added in the documentation.
  - Compatibility with tiff images.
  - Continuous integration with Travis is now supported.
  
  **Changed:**
  
  - The documentation website is now hosted on ReadTheDocs.
  - Updated documentation on the usage of AxonDeepSeg.
  - Change of axon and myelin masks filenames for better clarity.

0.3

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  **Added:**
  
  - Compatibility for image inputs other than png
  - Pre-processing of input images is now done inside AxonDeepSeg
  
  **Changed:**
  
  - Help display when running AxonDeepSeg from terminal