Anhima

This release adds support for Python 3.

Highlights:
- New likelihood-based function to infer population ancestry based on allele frequencies, see [anhima.af.maximum_likelihood_ancestry()](http://anhima.readthedocs.org/en/latest/af.htmlanhima.af.maximum_likelihood_ancestry).
- New function to locate variants within a set of intervals, see [anhima.loc.locate_intervals()](http://anhima.readthedocs.org/en/latest/loc.htmlanhima.loc.locate_intervals); note also that anhima.loc.locate_region() has been renamed to anhima.loc.locate_interval().
- Improved performance of the [anhima.ld.ld_prune_pairwise()](http://anhima.readthedocs.org/en/latest/ld.htmlanhima.ld.ld_prune_pairwise) function via a Cython extension.

Full list of issues and PRs:
- https://github.com/alimanfoo/anhima/issues?q=milestone%3Av0.10+is%3Aclosed

Contributors:
- alimanfoo
- hardingnj

Highlights:
- New functions [anhima.io.save_tped](http://anhima.readthedocs.org/en/latest/io.htmlanhima.io.save_tped) and [anhima.h5.save_tped](http://anhima.readthedocs.org/en/latest/h5.htmlanhima.h5.save_tped) to write genotype data to Plink transposed format (TPED)
- New functions [anhima.loc.locate_position](http://anhima.readthedocs.org/en/latest/loc.htmlanhima.loc.locate_position) and [anhima.loc.locate_positions](http://anhima.readthedocs.org/en/latest/loc.htmlanhima.loc.locate_positions) to find variants by genomic position (including intersecting two sets of positions)
- Bug fix, performance improvements and better compatibility with sparse matrices in the functions [anhima.gt.pack_diploid](http://anhima.readthedocs.org/en/latest/gt.htmlanhima.gt.pack_diploid) and [anhima.gt.unpack_diploid](http://anhima.readthedocs.org/en/latest/gt.htmlanhima.gt.unpack_diploid)
- Enhancements to the [anhima.ped]() module, including a new function [anhima.ped.impute_inheritance_nearest](http://anhima.readthedocs.org/en/latest/ped.htmlanhima.ped.impute_inheritance_nearest) to impute inheritance at unknown positions, and support for multiallelic variants in the function [anhima.ped.diploid_mendelian_error](http://anhima.readthedocs.org/en/latest/ped.htmlanhima.ped.diploid_mendelian_error)

Full list of issues addressed:
- https://github.com/alimanfoo/anhima/issues?q=milestone%3Av0.9

Contributors:
- alimanfoo
- hardingnj

Highlights in this release include some new functions in the [anhima.ped](http://anhima.readthedocs.org/en/latest/ped.html) module for finding and counting Mendelian errors, and some performance improvements and documentation fixes.

Contributors to this release:
- Nick Harding (hardingnj)
- Alistair Miles (alimanfoo)

Issues resolved: https://github.com/alimanfoo/anhima/issues?q=milestone%3Av0.8

This release contains some refactoring of functions previously in the [anhima.af](http://anhima.readthedocs.org/en/latest/f2.html) module into two new modules [anhima.sf](http://anhima.readthedocs.org/en/latest/sf.html) (site frequency spectra) and [anhima.f2](http://anhima.readthedocs.org/en/latest/f2.html) (doubleton sharing). There is also some new work in the [anhima.f2](http://anhima.readthedocs.org/en/latest/f2.html) module and a small enhancement in the [anhima.h5](http://anhima.readthedocs.org/en/latest/h5.html) module, see the list of issues resolve below for details.

Issues resolved: https://github.com/alimanfoo/anhima/issues?q=milestone%3Av0.7

First official release. See the [documentation](http://anhima.readthedocs.org/en/latest/) and [examples](http://nbviewer.ipython.org/github/alimanfoo/anhima/tree/master/examples/) for available functionality.

For existing users, see [issues addressed in this release](https://github.com/alimanfoo/anhima/issues?q=milestone%3Av0.6+is%3Aclosed).